LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr6g2589	ATGAAGGCTATGCCCTTATCTTTTGAAGAATACATAGGAAAAGGGGTGTTAGATTTTGGTTCAAGTGTTGTTGTTGGTTCTTCAGATTCATTGTTATTTCATCAGCAGCAAGAACAATTTCTACAAAGGTGGAGGGAAAATTGTTGCTATGCGGGCATTGAGCCCAATTCTGTTGTTGTTTTTGACCACAAAAAACCAAATCAAGAAACCACTCCTACTTCATCATCAACACTGTCTTCCTCACACGGTAGCGCCGCCGGAGGCACTGGCTGTTCAGCTGATAGCACAACCGGTGGTGGTGCCGCTGCCGCGGCAAATACCAAAAGCAATATACTACAAGGTGAAGGAAGATGTGGAATGGAAGATTGGGAAAGTGTGTTGTCTGATTCACCAAGTCAAGATCAAGATCATTCAATATTGAAATTGATTATGGAAGATATTGAAGATGCTTCTATGGGATTAAGTAAGCTTTTACAAGTTGGAACTAGTAATTCTCATTCTCAACAAGATGTTGAATTCAATGGTTTTAGTTTTATGGATCAACAAAGTTCTGTTCTTGATCCTATTTCTTCAAATGTTAACAACAATAATACCAACTTTGTAACTAGTATTGATTCTTCTTCTGTTGTTGCAACTACTGGTGGTTTGTTTCATCAGCAGCATCAACAACAACAAATTCAGTCTCTTGATGAGAAGCTACCTCAATTTGTTATGAATCCAAACCAAGCTCAGTTTATGCCTAACCCTAGTTTGGTTTTTCCTTTCACATACTCTCAGCTGCAAGAAAACCAAGATATTCATCATCAGCCACCAGCTAAAAGACTCAATTGTGGAACTAATTATGAAATTCCAAAGATACCCTTTTTGGATTCTGGTCAAGAGATGTTTCTTAAGCGGCAACAACAGCAGCAGCAGCAGCAACAGCAACATCAGCAGCAGCTTCAACTGCTTCCACATCATCTGCAGCAGAGGTCAATGGCACCTAAGCAGAAAATGGGGAACCCTGGAAGTGGTGGCGGCGAAGATGTGTCGACTCATCAGTTTCAGCAGGCTATAATTGATCAGCTTTTCAAAGCTGCAGAACTTATAGACGCCGGTAATCCGGAACTCGCGCACGGGATATTGGCGCGGCTCAATCACCAAATTTCTCCTATTGGGAAGCCTTTTCAAAGGGCTGCTTTCTATTTCAAGGAGGCATTATTGCAATTGCTTCAATCAAATGTCAATAATGGCAACAACAATAGTAACTTTTCACCAACCGGCCTCTTGCTCAAAATTGGTGCTTATAAATCATTCTCAGAAATCTCACCGGTTCTGCAGTTTGCAAATTTCACTTCCAACCAAGCATTGCTAGAAGCTGTAGAAGGTTATGATCGAATTCACATAATAGATTTCGATATTGGTTTTGGTGGACAATGGTCTTCTTTTATGCAAGAGTTGGCACTCAGGAATGGTGGTGCACCTGCACTTAAGATCACTGCATTTGTTTCGCCCTTTCACCATGACGAAATTGAGCTTAGTTTCACTCATGAGAATCTGAAACAATATGCTGGTGAAATTAACATGTCATTTGAGCTCGAGATTCTGACACTCGAGTCTCTGAATTCTGTTTCGTGGCCACAGCCACTTCGTGATTGCGAAGCAGTTGTTGTTAACTTGCCTATTTGCTCGTTCTCAAATTACCCTTCATACCTTCCTTTGGTGCTTCGATTTGTGAAACAGCTCATGCCGAAAATTGTGGTGACATTGGATAGGAGTTGTGATCGAACTGACGCACCATTTCCTCAGCATATGATTTTTGCACTCCAGTCTTATTCTGGTTTGCTCGAGTCACTTGATGCTGTTGGTGTTAATGTTCACCCGGATGTGCTTCAAATGATCGAGAAATACTATCTTCAACCAGCAGTTGAGAAGCTGGTTTCGGGTCGTCTACGTTCACAGGACCGAACACTTCCTTGGAAAAACCTACTCTTGTCAGCAGGGTTCTCGCCGTTGACGTTTAGTAACTTTACCGAGTCACAAGCAGAGTGTTTGGTGCAAAGGATTCCAGGTAGGGGATTTCATGTGGAGAAGAAGCAGAATTCACTCGCTTTATGTTGGCAAAGGAAGGATCTCATCTCGGTTTCGACTTGGAGATGCTGA	2142	0.4192	MKAMPLSFEEYIGKGVLDFGSSVVVGSSDSLLFHQQQEQFLQRWRENCCYAGIEPNSVVVFDHKKPNQETTPTSSSTLSSSHGSAAGGTGCSADSTTGGGAAAAANTKSNILQGEGRCGMEDWESVLSDSPSQDQDHSILKLIMEDIEDASMGLSKLLQVGTSNSHSQQDVEFNGFSFMDQQSSVLDPISSNVNNNNTNFVTSIDSSSVVATTGGLFHQQHQQQQIQSLDEKLPQFVMNPNQAQFMPNPSLVFPFTYSQLQENQDIHHQPPAKRLNCGTNYEIPKIPFLDSGQEMFLKRQQQQQQQQQQHQQQLQLLPHHLQQRSMAPKQKMGNPGSGGGEDVSTHQFQQAIIDQLFKAAELIDAGNPELAHGILARLNHQISPIGKPFQRAAFYFKEALLQLLQSNVNNGNNNSNFSPTGLLLKIGAYKSFSEISPVLQFANFTSNQALLEAVEGYDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFVSPFHHDEIELSFTHENLKQYAGEINMSFELEILTLESLNSVSWPQPLRDCEAVVVNLPICSFSNYPSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHMIFALQSYSGLLESLDAVGVNVHPDVLQMIEKYYLQPAVEKLVSGRLRSQDRTLPWKNLLLSAGFSPLTFSNFTESQAECLVQRIPGRGFHVEKKQNSLALCWQRKDLISVSTWRC*	714

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr6g2589	713	MobiDBLite	consensus disorder prediction	323	343	-	-
	Tpr6g2589	713	MobiDBLite	consensus disorder prediction	66	92	-	-
	Tpr6g2589	713	Pfam	GRAS domain family	353	712	IPR005202	-
	Tpr6g2589	713	PANTHER	OSJNBA0084A10.13 PROTEIN-RELATED	15	712	IPR005202	-
	Tpr6g2589	713	PANTHER	SCARECROW-LIKE PROTEIN 6	15	712	-	-
	Tpr6g2589	713	ProSiteProfiles	GRAS family profile.	343	712	IPR005202	-

Showing 1 to 6 of 6 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr6g2589	Tpr-Chr6	28324963	28328059	Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr6g2589	328	713	GRAS Transcription Factor Family	AT4G00150	56.298	2.68e-139	419

Showing 1 to 1 of 1 entries

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GRAS	Tpr6g2589		GRAS	5.9e-92	CL0063

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr6g2589	-		-	gmx:100805945	862.448

Showing 1 to 1 of 1 entries