Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2589 ATGAAGGCTATGCCCTTATCTTTTGAAGAATACATAGGAAAAGGGGTGTTAGATTTTGGTTCAAGTGTTGTTGTTGGTTCTTCAGATTCATTGTTATTTCATCAGCAGCAAGAACAATTTCTACAAAGGTGGAGGGAAAATTGTTGCTATGCGGGCATTGAGCCCAATTCTGTTGTTGTTTTTGACCACAAAAAACCAAATCAAGAAACCACTCCTACTTCATCATCAACACTGTCTTCCTCACACGGTAGCGCCGCCGGAGGCACTGGCTGTTCAGCTGATAGCACAACCGGTGGTGGTGCCGCTGCCGCGGCAAATACCAAAAGCAATATACTACAAGGTGAAGGAAGATGTGGAATGGAAGATTGGGAAAGTGTGTTGTCTGATTCACCAAGTCAAGATCAAGATCATTCAATATTGAAATTGATTATGGAAGATATTGAAGATGCTTCTATGGGATTAAGTAAGCTTTTACAAGTTGGAACTAGTAATTCTCATTCTCAACAAGATGTTGAATTCAATGGTTTTAGTTTTATGGATCAACAAAGTTCTGTTCTTGATCCTATTTCTTCAAATGTTAACAACAATAATACCAACTTTGTAACTAGTATTGATTCTTCTTCTGTTGTTGCAACTACTGGTGGTTTGTTTCATCAGCAGCATCAACAACAACAAATTCAGTCTCTTGATGAGAAGCTACCTCAATTTGTTATGAATCCAAACCAAGCTCAGTTTATGCCTAACCCTAGTTTGGTTTTTCCTTTCACATACTCTCAGCTGCAAGAAAACCAAGATATTCATCATCAGCCACCAGCTAAAAGACTCAATTGTGGAACTAATTATGAAATTCCAAAGATACCCTTTTTGGATTCTGGTCAAGAGATGTTTCTTAAGCGGCAACAACAGCAGCAGCAGCAGCAACAGCAACATCAGCAGCAGCTTCAACTGCTTCCACATCATCTGCAGCAGAGGTCAATGGCACCTAAGCAGAAAATGGGGAACCCTGGAAGTGGTGGCGGCGAAGATGTGTCGACTCATCAGTTTCAGCAGGCTATAATTGATCAGCTTTTCAAAGCTGCAGAACTTATAGACGCCGGTAATCCGGAACTCGCGCACGGGATATTGGCGCGGCTCAATCACCAAATTTCTCCTATTGGGAAGCCTTTTCAAAGGGCTGCTTTCTATTTCAAGGAGGCATTATTGCAATTGCTTCAATCAAATGTCAATAATGGCAACAACAATAGTAACTTTTCACCAACCGGCCTCTTGCTCAAAATTGGTGCTTATAAATCATTCTCAGAAATCTCACCGGTTCTGCAGTTTGCAAATTTCACTTCCAACCAAGCATTGCTAGAAGCTGTAGAAGGTTATGATCGAATTCACATAATAGATTTCGATATTGGTTTTGGTGGACAATGGTCTTCTTTTATGCAAGAGTTGGCACTCAGGAATGGTGGTGCACCTGCACTTAAGATCACTGCATTTGTTTCGCCCTTTCACCATGACGAAATTGAGCTTAGTTTCACTCATGAGAATCTGAAACAATATGCTGGTGAAATTAACATGTCATTTGAGCTCGAGATTCTGACACTCGAGTCTCTGAATTCTGTTTCGTGGCCACAGCCACTTCGTGATTGCGAAGCAGTTGTTGTTAACTTGCCTATTTGCTCGTTCTCAAATTACCCTTCATACCTTCCTTTGGTGCTTCGATTTGTGAAACAGCTCATGCCGAAAATTGTGGTGACATTGGATAGGAGTTGTGATCGAACTGACGCACCATTTCCTCAGCATATGATTTTTGCACTCCAGTCTTATTCTGGTTTGCTCGAGTCACTTGATGCTGTTGGTGTTAATGTTCACCCGGATGTGCTTCAAATGATCGAGAAATACTATCTTCAACCAGCAGTTGAGAAGCTGGTTTCGGGTCGTCTACGTTCACAGGACCGAACACTTCCTTGGAAAAACCTACTCTTGTCAGCAGGGTTCTCGCCGTTGACGTTTAGTAACTTTACCGAGTCACAAGCAGAGTGTTTGGTGCAAAGGATTCCAGGTAGGGGATTTCATGTGGAGAAGAAGCAGAATTCACTCGCTTTATGTTGGCAAAGGAAGGATCTCATCTCGGTTTCGACTTGGAGATGCTGA 2142 0.4192 MKAMPLSFEEYIGKGVLDFGSSVVVGSSDSLLFHQQQEQFLQRWRENCCYAGIEPNSVVVFDHKKPNQETTPTSSSTLSSSHGSAAGGTGCSADSTTGGGAAAAANTKSNILQGEGRCGMEDWESVLSDSPSQDQDHSILKLIMEDIEDASMGLSKLLQVGTSNSHSQQDVEFNGFSFMDQQSSVLDPISSNVNNNNTNFVTSIDSSSVVATTGGLFHQQHQQQQIQSLDEKLPQFVMNPNQAQFMPNPSLVFPFTYSQLQENQDIHHQPPAKRLNCGTNYEIPKIPFLDSGQEMFLKRQQQQQQQQQQHQQQLQLLPHHLQQRSMAPKQKMGNPGSGGGEDVSTHQFQQAIIDQLFKAAELIDAGNPELAHGILARLNHQISPIGKPFQRAAFYFKEALLQLLQSNVNNGNNNSNFSPTGLLLKIGAYKSFSEISPVLQFANFTSNQALLEAVEGYDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFVSPFHHDEIELSFTHENLKQYAGEINMSFELEILTLESLNSVSWPQPLRDCEAVVVNLPICSFSNYPSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHMIFALQSYSGLLESLDAVGVNVHPDVLQMIEKYYLQPAVEKLVSGRLRSQDRTLPWKNLLLSAGFSPLTFSNFTESQAECLVQRIPGRGFHVEKKQNSLALCWQRKDLISVSTWRC* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2589 713 MobiDBLite consensus disorder prediction 323 343 - -
Tpr6g2589 713 MobiDBLite consensus disorder prediction 66 92 - -
Tpr6g2589 713 Pfam GRAS domain family 353 712 IPR005202 -
Tpr6g2589 713 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 712 IPR005202 -
Tpr6g2589 713 PANTHER SCARECROW-LIKE PROTEIN 6 15 712 - -
Tpr6g2589 713 ProSiteProfiles GRAS family profile. 343 712 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2589 Tpr-Chr6 28324963 28328059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2589 328 713 GRAS Transcription Factor Family AT4G00150 56.298 2.68e-139 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tpr6g2589 GRAS 5.9e-92 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2589 - - gmx:100805945 862.448