Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2583 ATGTTCTTCTCTCACTTCCTGCATGTCCATCTTCAATTAAATAACAATAAATTCTATTTTAAATTCATTCAGGTTTCACTCTTTATGTTTTTCTTACGTTTATTTTTTATAAATTTTTTTGACCTTAGTGAAGAGGAATGCTTGTCACCTACTCCTTTTATAGTTTCCACTCTCTCTTCTCTTTCTCTCTCAAAACAAAACCAAATCTTCATATTAATCAAATTTAACTCTGTTTTTATTTTTCCTCTGTTTCTTCTTCCTTTGTTTTTTGTGTTTCATTTTATTATTATTATTGTTATGGATAAATATAAGTGCAAACTTTGCTATAGAAGCTTCAACAATGGAAGAGCATTGGGTGGTCACATGAGATCCCACATGATGAATCTTCTTGTTACGAAACCAGAAGAAGATTCATCACGAATGATTCAACTTAGTTTTGAAGCTGAATCAGCACCATCTTCATCGTCATCAGAAGATGATGATGACGATGAAAAGGGTCTTAGTTATGGCCTTAGAGAAAATCCAAAGAGAAGCATTCGTCTCGTGGATCAAGACTTTTCTTTTCCACAAGTTGATACAAGTTCCGTGATTCTTCAAGATATTGAAAGCGAAACGGAATCGTCCAAGAACAACCCAACTCGCAGAAGATCCAAAAGGGTATGGAAAATTCGTGAGTTTGATCAGAAGTATTACGGTGAATCTGCTATGAAAAAAGTTAGATTTTTTAATAAAACAATATCTTCTGTTGTTGATCATGAACCAGTTAGTTCAGTTTCTGATACAACAACCGAAGAAGATGTTGCATTTTGTCTTATGCAATTGTCTAGAGACAATTGGAATAGACAAAGTGAACAATATGAAGAGCCAGAAGAAGACGACGAAGAAGAAATAGAGTATGATGAAGATGAAGACGAAGAAGCTGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAATCGAAAGATCTTTAGAAGATAGCGATGAATCTCAAGAGCTAATTAAAGTTAGCAAGAATAACAATAAAGTACGTAAAGGAAGGTACAAATGTGAAACATGTAATAAAGTATTCAAATCTTATCAAGCATTGGGTGGTCATAGAGCAAGTCACAAGAAGATTAAATTGAACATAACAGTCGAAGAATCGCAACCGGAATACGAAGTTGTTGAAAAGAAAATTCACGAATGTCCGGTTTGTTTTCGAGTATTTAATTCCGGTCAAGCACTTGGTGGACACAAAAGAACACATGTTATTCATGGATCAACAACAACAGTTCCAATTTTCAGCTCAAAAAAAGTTGCAAAAAGTGTTATAGATCTTAATCTTCCTGCTCCAATTGATGATGATGAAGTTAGTCAAATTGAAAATTCTGCTGTTTCAGATGCAGAATTTGTCAAAACTCGTTAG 1404 0.339 MFFSHFLHVHLQLNNNKFYFKFIQVSLFMFFLRLFFINFFDLSEEECLSPTPFIVSTLSSLSLSKQNQIFILIKFNSVFIFPLFLLPLFFVFHFIIIIVMDKYKCKLCYRSFNNGRALGGHMRSHMMNLLVTKPEEDSSRMIQLSFEAESAPSSSSSEDDDDDEKGLSYGLRENPKRSIRLVDQDFSFPQVDTSSVILQDIESETESSKNNPTRRRSKRVWKIREFDQKYYGESAMKKVRFFNKTISSVVDHEPVSSVSDTTTEEDVAFCLMQLSRDNWNRQSEQYEEPEEDDEEEIEYDEDEDEEAEEEEEEEEEEEIERSLEDSDESQELIKVSKNNNKVRKGRYKCETCNKVFKSYQALGGHRASHKKIKLNITVEESQPEYEVVEKKIHECPVCFRVFNSGQALGGHKRTHVIHGSTTTVPIFSSKKVAKSVIDLNLPAPIDDDEVSQIENSAVSDAEFVKTR* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2583 467 Coils Coil 290 332 - -
Tpr6g2583 467 MobiDBLite consensus disorder prediction 280 337 - -
Tpr6g2583 467 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 100 465 IPR044303 GO:0006355
Tpr6g2583 467 MobiDBLite consensus disorder prediction 286 325 - -
Tpr6g2583 467 Pfam C2H2-type zinc finger 103 126 - -
Tpr6g2583 467 Pfam C2H2-type zinc finger 346 371 - -
Tpr6g2583 467 Pfam C2H2-type zinc finger 393 415 - -
Tpr6g2583 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 125 IPR013087 -
Tpr6g2583 467 SUPERFAMILY beta-beta-alpha zinc fingers 102 127 IPR036236 -
Tpr6g2583 467 SUPERFAMILY beta-beta-alpha zinc fingers 346 415 IPR036236 -
Tpr6g2583 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 393 415 IPR013087 -
Tpr6g2583 467 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 100 465 - -
Tpr6g2583 467 Gene3D Classic Zinc Finger 344 415 - -
Tpr6g2583 467 ProSitePatterns Zinc finger C2H2 type domain signature. 395 415 IPR013087 -
Tpr6g2583 467 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Tpr6g2583 467 SMART c2h2final6 103 125 IPR013087 -
Tpr6g2583 467 SMART c2h2final6 347 369 IPR013087 -
Tpr6g2583 467 SMART c2h2final6 393 415 IPR013087 -
Tpr6g2583 467 MobiDBLite consensus disorder prediction 147 169 - -
Tpr6g2583 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 347 374 IPR013087 -
Tpr6g2583 467 ProSitePatterns Zinc finger C2H2 type domain signature. 349 369 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2583 Tpr-Chr6 28224062 28225747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2583 100 453 C2H2 Transcription Factor Family AT3G60580 43.169 1.41e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr6g2583 zf-C2H2_6 7.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2583 - - cam:101509915 456.832