Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2581 ATGGCTCTTACATATGGACATGCATTCTCTCATATACCCATCTTTGTATCACTCTCGATATTCCTAGTGATCCCTTCCTCTTGTCTTAATCCTAGGAAGTTTCTTAATGTCACTTCATACTCCCCATCTGATTCACCTTATCAATCATCTTCATATGCCACTTTTTATGGACCTCCCGATGGTGATGGAAGTGAAGGTGGTGCTTGTGGATATGGAAAGGCTGTTGGGCAACCACCGTTTAATTCAATGATATCGGCCGGAGGCCCTGCCATTTTCAAGGGAGGCAAGGGTTGTGGTGCTTGTTATCAGGTGAGATGTGTAGGAAATCAAGCATGCTCAGGCAATCCTGTTACAATAGTTATCACTGACGAGTGCCCTGGTTGTAATTACAATTTTGATATGAGTGGCAGAGCTTTTGGTTCCATGGCAATTTCAGGGCGTGGTGACCAGCTACGCAACGCCGAGAAAGTTCTGGTTCAGTATAGGAGAGTTGCATGCAACTACCCTGGTGTGTCAATAACTTTTCGTGTGGACCTTGGAACAAATCCATATTATTTTGCTACCTTAATTGAATATGAGGATGGGGATGGTGATCTCAAAACAGTTGAAATCAAAGAAGCAAACTCAGCAACTTGGGAAAGCATGCAAGAATCAGTTGGTGCTGTTTGGAAATTAAATAAAGGAGCACCAATGAGAGCACCATTTTCTATTAGGTTAACAACAATTGAGTCTGGAAAAGTATTTGTTGCCAATAATGTGATCCCTGTAGGTTATAAGCCTGGTGATACTTATAGGGCAAATGGAAATTTTAATTAA 816 0.4167 MALTYGHAFSHIPIFVSLSIFLVIPSSCLNPRKFLNVTSYSPSDSPYQSSSYATFYGPPDGDGSEGGACGYGKAVGQPPFNSMISAGGPAIFKGGKGCGACYQVRCVGNQACSGNPVTIVITDECPGCNYNFDMSGRAFGSMAISGRGDQLRNAEKVLVQYRRVACNYPGVSITFRVDLGTNPYYFATLIEYEDGDGDLKTVEIKEANSATWESMQESVGAVWKLNKGAPMRAPFSIRLTTIESGKVFVANNVIPVGYKPGDTYRANGNFN* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2581 271 Gene3D - 35 167 IPR036908 -
Tpr6g2581 271 Pfam Expansin C-terminal domain 173 255 IPR007117 -
Tpr6g2581 271 SMART dpbb_1 84 161 IPR007112 -
Tpr6g2581 271 PANTHER EXPANSIN-B2-RELATED 8 270 - -
Tpr6g2581 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 171 IPR007112 -
Tpr6g2581 271 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Tpr6g2581 271 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Tpr6g2581 271 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Tpr6g2581 271 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Tpr6g2581 271 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Tpr6g2581 271 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576
Tpr6g2581 271 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Tpr6g2581 271 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Tpr6g2581 271 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
Tpr6g2581 271 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Tpr6g2581 271 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
Tpr6g2581 271 PRINTS Major pollen allergen Lol pI signature 221 238 IPR005795 GO:0005576|GO:0019953
Tpr6g2581 271 Gene3D - 170 269 IPR036749 -
Tpr6g2581 271 SUPERFAMILY Barwin-like endoglucanases 46 170 IPR036908 -
Tpr6g2581 271 PANTHER EXPANSIN-B3 8 270 - -
Tpr6g2581 271 SUPERFAMILY PHL pollen allergen 172 265 IPR036749 -
Tpr6g2581 271 Pfam Lytic transglycolase 85 148 IPR009009 -
Tpr6g2581 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 266 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2581 Tpr-Chr6 28211885 28213527 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2581 26 270 Expansin Gene Family AT1G65680 54.618 9.56e-99 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2581 - - gmx:100805408 360.533