Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr6g2580 | ATGACTCTCTCTTATGGACATGCATTCTTTCATATACTCATCTTTGTATCACTCTCAATATTCCTAGTGACCCCTTCCTCTTGTCTTAATCCTAGGAAGCTTCTTAATTTTACTTCATACTCCTTATCTGTTTCAGATTCATCTACAATGGCTACTTTTTATGGACCTCCCAACGGTGATGGAAGTGAAAGTGGTGCTTGTGGATATGGAAATAAAGTTGGGTTGCCTCCATTCAACTCCATGATATCTGCAGGAAACCATGTCATCTTTGCATCAGGAAAAGGCTGTGGTTCTTGTTATCAGATGAAATGCACAGGAAATTCTGCATGCTCAGACAATCCTATTACCGTTTTTATCACAGATTATTGTCCTGAATGTGATCATTATTTTGATTTAAGTGGTAAAGCTTTTGGTTCTATGGCAATTTCTGGTCAAGCTGACAAGCTACGCATTGCTGGAAAAGTTCCCGTTCAATATAGTAGAGTTGCATGCAACTACCCTGGTGTATCAATAGCTTTTAGTGTGGACTCTGGATCTAACCAAAATTATTTTGCTACCGTAATTGAATATGAGGATGGGGATGGTGATCTCAAAACCGTTGAACTCAAAGAAGCACTTAACTCAGCAAATTGGGAAAGCATGCAACAATCATGGGGTGCTGTTTGGAAAATTAATAAAGGGGCACCATTGAGAGCACCATTTTCTATTAGGTTAACTACAATTGAATCTGGCAAAGTATTTGTTGCCAATAATGTCATCCCTGCAGGTTGGAAGCCTGGTCAAATTTATAGAGCAGTTGGAAATTTCAACTAG | 813 | 0.3887 | MTLSYGHAFFHILIFVSLSIFLVTPSSCLNPRKLLNFTSYSLSVSDSSTMATFYGPPNGDGSESGACGYGNKVGLPPFNSMISAGNHVIFASGKGCGSCYQMKCTGNSACSDNPITVFITDYCPECDHYFDLSGKAFGSMAISGQADKLRIAGKVPVQYSRVACNYPGVSIAFSVDSGSNQNYFATVIEYEDGDGDLKTVELKEALNSANWESMQQSWGAVWKINKGAPLRAPFSIRLTTIESGKVFVANNVIPAGWKPGQIYRAVGNFN* | 271 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr6g2580 | 270 | Pfam | Expansin C-terminal domain | 171 | 254 | IPR007117 | - | |
Tpr6g2580 | 270 | SUPERFAMILY | Barwin-like endoglucanases | 46 | 168 | IPR036908 | - | |
Tpr6g2580 | 270 | Gene3D | - | 165 | 265 | IPR036749 | - | |
Tpr6g2580 | 270 | SMART | dpbb_1 | 82 | 159 | IPR007112 | - | |
Tpr6g2580 | 270 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 64 | 169 | IPR007112 | - | |
Tpr6g2580 | 270 | PANTHER | EXPANSIN-B3 | 10 | 269 | - | - | |
Tpr6g2580 | 270 | PANTHER | EXPANSIN-B2-RELATED | 10 | 269 | - | - | |
Tpr6g2580 | 270 | Pfam | Lytic transglycolase | 83 | 159 | IPR009009 | - | |
Tpr6g2580 | 270 | Gene3D | - | 39 | 164 | IPR036908 | - | |
Tpr6g2580 | 270 | PRINTS | Major pollen allergen Lol pI signature | 84 | 95 | IPR005795 | GO:0005576|GO:0019953 | |
Tpr6g2580 | 270 | PRINTS | Major pollen allergen Lol pI signature | 104 | 114 | IPR005795 | GO:0005576|GO:0019953 | |
Tpr6g2580 | 270 | PRINTS | Major pollen allergen Lol pI signature | 141 | 156 | IPR005795 | GO:0005576|GO:0019953 | |
Tpr6g2580 | 270 | PRINTS | Major pollen allergen Lol pI signature | 173 | 188 | IPR005795 | GO:0005576|GO:0019953 | |
Tpr6g2580 | 270 | PRINTS | Major pollen allergen Lol pI signature | 189 | 204 | IPR005795 | GO:0005576|GO:0019953 | |
Tpr6g2580 | 270 | PRINTS | Major pollen allergen Lol pI signature | 220 | 237 | IPR005795 | GO:0005576|GO:0019953 | |
Tpr6g2580 | 270 | SUPERFAMILY | PHL pollen allergen | 171 | 264 | IPR036749 | - | |
Tpr6g2580 | 270 | PRINTS | Expansin/Lol pI family signature | 45 | 60 | IPR007118 | GO:0005576 | |
Tpr6g2580 | 270 | PRINTS | Expansin/Lol pI family signature | 63 | 81 | IPR007118 | GO:0005576 | |
Tpr6g2580 | 270 | PRINTS | Expansin/Lol pI family signature | 86 | 104 | IPR007118 | GO:0005576 | |
Tpr6g2580 | 270 | PRINTS | Expansin/Lol pI family signature | 152 | 168 | IPR007118 | GO:0005576 | |
Tpr6g2580 | 270 | PRINTS | Expansin/Lol pI family signature | 211 | 225 | IPR007118 | GO:0005576 | |
Tpr6g2580 | 270 | PRINTS | Expansin/Lol pI family signature | 251 | 265 | IPR007118 | GO:0005576 | |
Tpr6g2580 | 270 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 182 | 265 | IPR007117 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr6g2580 | Tpr-Chr6 | 28206031 | 28208225 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr6g2580 | 28 | 269 | Expansin Gene Family | AT1G65680 | 55.285 | 3.89e-96 | 281 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr6g2580 | - | - | gmx:548090 | 375.941 |