Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2580 ATGACTCTCTCTTATGGACATGCATTCTTTCATATACTCATCTTTGTATCACTCTCAATATTCCTAGTGACCCCTTCCTCTTGTCTTAATCCTAGGAAGCTTCTTAATTTTACTTCATACTCCTTATCTGTTTCAGATTCATCTACAATGGCTACTTTTTATGGACCTCCCAACGGTGATGGAAGTGAAAGTGGTGCTTGTGGATATGGAAATAAAGTTGGGTTGCCTCCATTCAACTCCATGATATCTGCAGGAAACCATGTCATCTTTGCATCAGGAAAAGGCTGTGGTTCTTGTTATCAGATGAAATGCACAGGAAATTCTGCATGCTCAGACAATCCTATTACCGTTTTTATCACAGATTATTGTCCTGAATGTGATCATTATTTTGATTTAAGTGGTAAAGCTTTTGGTTCTATGGCAATTTCTGGTCAAGCTGACAAGCTACGCATTGCTGGAAAAGTTCCCGTTCAATATAGTAGAGTTGCATGCAACTACCCTGGTGTATCAATAGCTTTTAGTGTGGACTCTGGATCTAACCAAAATTATTTTGCTACCGTAATTGAATATGAGGATGGGGATGGTGATCTCAAAACCGTTGAACTCAAAGAAGCACTTAACTCAGCAAATTGGGAAAGCATGCAACAATCATGGGGTGCTGTTTGGAAAATTAATAAAGGGGCACCATTGAGAGCACCATTTTCTATTAGGTTAACTACAATTGAATCTGGCAAAGTATTTGTTGCCAATAATGTCATCCCTGCAGGTTGGAAGCCTGGTCAAATTTATAGAGCAGTTGGAAATTTCAACTAG 813 0.3887 MTLSYGHAFFHILIFVSLSIFLVTPSSCLNPRKLLNFTSYSLSVSDSSTMATFYGPPNGDGSESGACGYGNKVGLPPFNSMISAGNHVIFASGKGCGSCYQMKCTGNSACSDNPITVFITDYCPECDHYFDLSGKAFGSMAISGQADKLRIAGKVPVQYSRVACNYPGVSIAFSVDSGSNQNYFATVIEYEDGDGDLKTVELKEALNSANWESMQQSWGAVWKINKGAPLRAPFSIRLTTIESGKVFVANNVIPAGWKPGQIYRAVGNFN* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2580 270 Pfam Expansin C-terminal domain 171 254 IPR007117 -
Tpr6g2580 270 SUPERFAMILY Barwin-like endoglucanases 46 168 IPR036908 -
Tpr6g2580 270 Gene3D - 165 265 IPR036749 -
Tpr6g2580 270 SMART dpbb_1 82 159 IPR007112 -
Tpr6g2580 270 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 169 IPR007112 -
Tpr6g2580 270 PANTHER EXPANSIN-B3 10 269 - -
Tpr6g2580 270 PANTHER EXPANSIN-B2-RELATED 10 269 - -
Tpr6g2580 270 Pfam Lytic transglycolase 83 159 IPR009009 -
Tpr6g2580 270 Gene3D - 39 164 IPR036908 -
Tpr6g2580 270 PRINTS Major pollen allergen Lol pI signature 84 95 IPR005795 GO:0005576|GO:0019953
Tpr6g2580 270 PRINTS Major pollen allergen Lol pI signature 104 114 IPR005795 GO:0005576|GO:0019953
Tpr6g2580 270 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576|GO:0019953
Tpr6g2580 270 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576|GO:0019953
Tpr6g2580 270 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576|GO:0019953
Tpr6g2580 270 PRINTS Major pollen allergen Lol pI signature 220 237 IPR005795 GO:0005576|GO:0019953
Tpr6g2580 270 SUPERFAMILY PHL pollen allergen 171 264 IPR036749 -
Tpr6g2580 270 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Tpr6g2580 270 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Tpr6g2580 270 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Tpr6g2580 270 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Tpr6g2580 270 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Tpr6g2580 270 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576
Tpr6g2580 270 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 265 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2580 Tpr-Chr6 28206031 28208225 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2580 28 269 Expansin Gene Family AT1G65680 55.285 3.89e-96 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2580 - - gmx:548090 375.941