Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2578 ATGGCTGGTGGTGTTTCAAGCAGAACTCGTAGCAAGAAGGTTCCACCGTTTCACATTCCTTCGTTTGATTCTTCATCTTCAAAGAGAAGAAAGAATGATGAAGATGTTATGAGTTTAGATTCTGCTTCTGGGTCAAAAAGAAAAAGGTTAAAAGATGAAGCTTTTGTGTTTCCTCAGAATAAGAATGCTCATGAAGTTATTTTCATCGAAGAAGAAGAAGAAGAAGGGTTTAAGAAGGAAGTGAAGATTGATGAGAGTGGAGGAAGTAGTGAGATTGGTGATAATAAAGATGGAAACTTTGTTGATGAAAAGATTGGTTGGGATAGTGAAAATCCGATTATATGTTCAGATGAGTCTGGTGAGAGTGATGATGAAGAACAGTCTGTTGGTTTTTATGCTGCTGAAGAAGAAGAAGATGATGAAACTTTGATTATTTTTCATGACAGTGTTTATAAAGATGATGATTCTGATGAGAGTGATGATGATGATGATGATGATGATGAGAGTGAAGAAAACGAGACGAGCGATGAGGATTTTAAAGTTGATGAACTGGATGAGGTTTCTGATGATGATGAAGAGAAAAAAAGAATGACAAAAGATTTTGATGAACTGGATGAGGTTTCTGATAGACAAAGTGGAATTTGTCATATGAAAAATGAGAAGAAGGGTTCTATAAACAATCATGAAATTAAGGGTTGTTCTTCTTCAAACAACAAAGAAGAATCAAAGAAAAAGAAAGCAAAAAGTGTGGAAAAAAATGTCTCTGATGTTTCCGATTCTATTGAAGAAAAACAGAAATATGGCAAACGAAGATGGAATAATTCAGAGAAACAGAAAAAGATGGAGAACAATGGTTTGAATCGAAGGGGGAAAAGCGCGTATTTTACATCGATGGATTTGAGATTAGCCAAACTGCTTTCTGAATCCTATTCACACAAGAAAAATAGCATGAAGAATGATCCAATTCTGCCGGAGGTTAATCAGTGTGATGCACGGAAACCACCGGTTTGTGTTGAGGCACCTCTGATATGGAGCCTAAAAAGGGTTCAAACAGTGGAACTGACCGAAGAGGAGGAGGAGGAACGGAGGAAGGATGAAGCGTTAAAGCCCATATGGGATGAAATGGAAATGTACATTAACGAATCAGAAGCTGAATCCAAGATTGGATGTTTATGGACAAATGAAGCCTCACAAGGAAATAACGGAAGTCCTTCATCTCGCTGTGAGCATGACATTATTTACGACGAACAGATTGGTGATTATTGTGAATCCTGTGGTAAAGTTATTACTGAAAGCAGATATAAGACACAACTAGTGATTGATAAATATCCATATGAAGGGTATGAAAAAAGAGCTTCATCGGAGGGTTCTGAAAATTCCTTACACTTGGATTTCTCTCAGTCTCGCGTCAATGTTTCCGATGGTGATTTAGACGCTAATATCTGTCAAAAAAAAGGCATAATTTGGGACCTAATTCCTGAAGTGAGAGAAACTTTATATCCTCATCAACAGGAAGGCTTTGAGTTTATATGGAAAAACTTGGCTGGAAATATCGAGCTTCAAAAGTTAAAGAATGCCGATCCTCTCAGTGAAGGTGGCTGCATTATTTCTCATGCTCCTGGAACCGGAAAGACAAGGCTGACAATAGTTTTCCTCAAGGCATATTTGAAGTTGTTTCCAAATTGCTTGCCAATTGTTGTCGCTCCTGCTAGTTTACTGCTAACTTGGGAAGAGGAATTCAAGAAATGGGACATTGGAGTTCCATTTCACAATATAAGCAATTTAGAGTTATCTGGTAAAGAGCATGCTGATGTGCTTAACAGATTCGATAGTACACGGCATCGTCCTGACGAAACACGAATAGTGAAACTTATTTCGTGGTTCAAAGAAACAAGCATTCTTGGAATCAGCTACAATTTGTACGGATCAATTTGCCAACATAAGAAAGAGAAAAATCTTGAAAGTGTGAAGGAGACAAAAGGAAACTTTGATATGCGAGAAGTTCTACTTGAAGCACCTGGTTTGTTAGTTCTTGATGAAGGACACATACCAAGAAATCAAAGAAGTCATATTTGGAAGGTGTTGACGAAGAGTCAAACGCAGAAGCGAATCATCCTTTCCGGAACTCCATTCCAGAATAATTTCTCGGAGCTTTACAGCACTTTGAGCTTAGTCAAGCCTTCCTTTCCTACCATGATACCGCCTGAGTTAAAAAGCTTTTGTCATAAGAAGGGACAAACATCATCTAAACAATGGGGAAGGGAAGCTGATTCAGGCAATATAGAAAGAGACCCTTCTGATGATGATAAGATTGAGAAGTTGAAACTGCTAATGGAACCCTTTGTTCATATTCACAAGGGTGCGATCCTTGAAAATAAGCTTCCCGGGTTAAGGGAATGTTTGGTGACTTTGAAGGCAGATAGTTTGCAGAATGATATTCTGAAGAGTATTAAACGTTCTCAGAACAAAGTATTTAACTTTGAGCGTAAGATTGCATTGGCATCTGTCCATCCATCTCTTTTCCTTAAATGTCATCTTTCGAAAGAAGAAGAATCTTTACTCGACAAGGATAAGCTAAAACAGCTTAGAATGAACCCACATGAAGGTGTCAAAACAAAATTTGTGTACGAGTTTGTTCGGCTGTGTGATGCTTCCAACGAGAAAGTCCTTATTTTCAGCCAATTCCATGCTCCTTTACAATTAATTCAAGACCAATTAAACTCGGCTTTTAACTGGTCTAACGGAGAAGTGCTGTTCATGTCTAGCAATGATTCTACAAAGGATAAGCAGTCCATAATCCACCGCTTCAATGATGAAAATAGCAAAGCGAAGGTTCTGCTTGCAGCTACAAAAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTGGTGCTTCTTGATGTTGCATGGAATCCTTCGGTCAAAAGACAGGCTATCAGTCGAGCATATAGGATTGGACAGAAGAAGGTGGTATACACATACCATCTTCTCGTTGAAGGGACTACCGAGGCAGAAAAATATGGCAAACAGGCCGAAAAGGATCGGTTATCAGAGCTCCTTTTTTCAGCTAAAAATGCCACCGATAATGATGTGTCCAAGCGCTGTGCTGTGAACTTTGAAGATGAAGTCCTTGATAAGATGACCCGACATGAAAAGCTCATGGACATATTCTTCAATATTGCTGCTTCTTTAGAGAGTTGA 3207 0.3876 MAGGVSSRTRSKKVPPFHIPSFDSSSSKRRKNDEDVMSLDSASGSKRKRLKDEAFVFPQNKNAHEVIFIEEEEEEGFKKEVKIDESGGSSEIGDNKDGNFVDEKIGWDSENPIICSDESGESDDEEQSVGFYAAEEEEDDETLIIFHDSVYKDDDSDESDDDDDDDDESEENETSDEDFKVDELDEVSDDDEEKKRMTKDFDELDEVSDRQSGICHMKNEKKGSINNHEIKGCSSSNNKEESKKKKAKSVEKNVSDVSDSIEEKQKYGKRRWNNSEKQKKMENNGLNRRGKSAYFTSMDLRLAKLLSESYSHKKNSMKNDPILPEVNQCDARKPPVCVEAPLIWSLKRVQTVELTEEEEEERRKDEALKPIWDEMEMYINESEAESKIGCLWTNEASQGNNGSPSSRCEHDIIYDEQIGDYCESCGKVITESRYKTQLVIDKYPYEGYEKRASSEGSENSLHLDFSQSRVNVSDGDLDANICQKKGIIWDLIPEVRETLYPHQQEGFEFIWKNLAGNIELQKLKNADPLSEGGCIISHAPGTGKTRLTIVFLKAYLKLFPNCLPIVVAPASLLLTWEEEFKKWDIGVPFHNISNLELSGKEHADVLNRFDSTRHRPDETRIVKLISWFKETSILGISYNLYGSICQHKKEKNLESVKETKGNFDMREVLLEAPGLLVLDEGHIPRNQRSHIWKVLTKSQTQKRIILSGTPFQNNFSELYSTLSLVKPSFPTMIPPELKSFCHKKGQTSSKQWGREADSGNIERDPSDDDKIEKLKLLMEPFVHIHKGAILENKLPGLRECLVTLKADSLQNDILKSIKRSQNKVFNFERKIALASVHPSLFLKCHLSKEEESLLDKDKLKQLRMNPHEGVKTKFVYEFVRLCDASNEKVLIFSQFHAPLQLIQDQLNSAFNWSNGEVLFMSSNDSTKDKQSIIHRFNDENSKAKVLLAATKACSEGISLVGASRVVLLDVAWNPSVKRQAISRAYRIGQKKVVYTYHLLVEGTTEAEKYGKQAEKDRLSELLFSAKNATDNDVSKRCAVNFEDEVLDKMTRHEKLMDIFFNIAASLES* 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2578 1068 SMART ultradead3 495 740 IPR014001 -
Tpr6g2578 1068 Gene3D - 473 775 IPR038718 -
Tpr6g2578 1068 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 1064 IPR044567 GO:0080188
Tpr6g2578 1068 Gene3D - 795 1061 IPR027417 -
Tpr6g2578 1068 MobiDBLite consensus disorder prediction 154 189 - -
Tpr6g2578 1068 MobiDBLite consensus disorder prediction 74 104 - -
Tpr6g2578 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 673 1035 IPR027417 -
Tpr6g2578 1068 Pfam Helicase conserved C-terminal domain 881 988 IPR001650 -
Tpr6g2578 1068 MobiDBLite consensus disorder prediction 74 287 - -
Tpr6g2578 1068 CDD SF2_C_SNF 871 999 - -
Tpr6g2578 1068 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 2 1064 - -
Tpr6g2578 1068 MobiDBLite consensus disorder prediction 234 286 - -
Tpr6g2578 1068 MobiDBLite consensus disorder prediction 744 766 - -
Tpr6g2578 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 735 IPR027417 -
Tpr6g2578 1068 MobiDBLite consensus disorder prediction 190 227 - -
Tpr6g2578 1068 MobiDBLite consensus disorder prediction 1 54 - -
Tpr6g2578 1068 SMART helicmild6 900 988 IPR001650 -
Tpr6g2578 1068 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 874 1034 IPR001650 -
Tpr6g2578 1068 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 525 728 IPR014001 -
Tpr6g2578 1068 MobiDBLite consensus disorder prediction 24 54 - -
Tpr6g2578 1068 MobiDBLite consensus disorder prediction 117 143 - -
Tpr6g2578 1068 Pfam SNF2-related domain 516 818 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2578 Tpr-Chr6 28185501 28189723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2578 884 1018 RAD5 or RAD16-like Gene Family AT5G43530 34.815 1.20e-15 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr6g2578 SNF2_N 2.3e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2578 K10875 - gmx:100812737 748.043