Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2577 ATGGCTCTTACATTTGAACGTGCATTCTCTAATATACTTATATTAGTAGTTTCACTCTTAATATTAGTGACCCCTTCCTCTTGTTTTAATCCAAAGAAGCTTGTTAATTTAACTTCATACTCATCTGATTCAGATTGGTCACCTTCAGTGGCTACTTGGTATGGGGAAGCCAATGGAGATGGAAGTGAAGGTGGTGCTTGTGGATATCAAAATGCTGTTGGGCAACCACCATTCTCTTCAATGATATCCGCCGGAAGTCCTGCAATTTATGACTCGGGAAAAGGTTGCGGTTCTTGTTACGAGGTGAGGTGCACAGGAAATTCTGCATGTTCAGGCAACCCTGTGAGGGTAGTTATCACTGATGAGTGTGCTGGCTGTGGCTCAGATGCTCAATATCATTTTGATTTGAGTGGTAGTGCTTTTGGGTCAATGGCAATTTCAGGTCAAGATCAACAACTACGCAATGCTGGAATAATACACATGGAACATAGAAGAGTTAAATGCAACTATGGTAGATCAATAGCTTTTCATGTGGACTCTGGATCCAATCAAGAATACTTTGCTGCCTTGATTGAATATGAGAATGGAGATGGTGATCTTAACAGAGTTGAACTCAAGGAAGCACTTGACTCTTCCACTTGGGATTCCATGCAACAATCATGGGGAGCTGTTTGGAAATTTGAAAAAGGAGCACCATTGAAAGCACCATTTTCAATTAAGCTAACTACACTTGCATCTGGCAAGACTATTGTGGCAGAGAATGTGATTCCTGCAGGTTGGAAGCCTGGTCAGACTTATAGATCAATTGTGAATTTTTAA 819 0.409 MALTFERAFSNILILVVSLLILVTPSSCFNPKKLVNLTSYSSDSDWSPSVATWYGEANGDGSEGGACGYQNAVGQPPFSSMISAGSPAIYDSGKGCGSCYEVRCTGNSACSGNPVRVVITDECAGCGSDAQYHFDLSGSAFGSMAISGQDQQLRNAGIIHMEHRRVKCNYGRSIAFHVDSGSNQEYFAALIEYENGDGDLNRVELKEALDSSTWDSMQQSWGAVWKFEKGAPLKAPFSIKLTTLASGKTIVAENVIPAGWKPGQTYRSIVNF* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2577 272 Pfam Lytic transglycolase 83 161 IPR009009 -
Tpr6g2577 272 Gene3D - 33 169 IPR036908 -
Tpr6g2577 272 PANTHER EXPANSIN-B3 19 272 - -
Tpr6g2577 272 PRINTS Major pollen allergen Lol pI signature 84 95 IPR005795 GO:0005576|GO:0019953
Tpr6g2577 272 PRINTS Major pollen allergen Lol pI signature 104 114 IPR005795 GO:0005576|GO:0019953
Tpr6g2577 272 PRINTS Major pollen allergen Lol pI signature 145 160 IPR005795 GO:0005576|GO:0019953
Tpr6g2577 272 PRINTS Major pollen allergen Lol pI signature 176 191 IPR005795 GO:0005576|GO:0019953
Tpr6g2577 272 PRINTS Major pollen allergen Lol pI signature 192 207 IPR005795 GO:0005576|GO:0019953
Tpr6g2577 272 PRINTS Major pollen allergen Lol pI signature 244 261 IPR005795 GO:0005576|GO:0019953
Tpr6g2577 272 SMART dpbb_1 82 163 IPR007112 -
Tpr6g2577 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 268 IPR007117 -
Tpr6g2577 272 PANTHER EXPANSIN-B2-RELATED 19 272 - -
Tpr6g2577 272 SUPERFAMILY PHL pollen allergen 172 268 IPR036749 -
Tpr6g2577 272 Pfam Expansin C-terminal domain 174 257 IPR007117 -
Tpr6g2577 272 Gene3D - 170 272 IPR036749 -
Tpr6g2577 272 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Tpr6g2577 272 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Tpr6g2577 272 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Tpr6g2577 272 PRINTS Expansin/Lol pI family signature 156 172 IPR007118 GO:0005576
Tpr6g2577 272 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576
Tpr6g2577 272 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Tpr6g2577 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 173 IPR007112 -
Tpr6g2577 272 SUPERFAMILY Barwin-like endoglucanases 39 170 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2577 Tpr-Chr6 28180348 28182590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2577 26 272 Expansin Gene Family AT1G65680 60.081 1.59e-112 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2577 - - gmx:548090 457.218