Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2575 ATGAGTCAGTGTGTTCCTAGTTGGGATGTTGACGAAAATCCACCACCACTACCAAGAACTCTTTCTCTTCGTTCTAGCTCTAATTCAACTGCCACTCTTGATGTTCCCATGTTAGACTATGATGTTGCAGAACTTACATGGGAAAATGGACAAATTTCTATGCATGGCTTAGGGTTACCGAAAGTGCCGGTTAAACCACCTTCAACAACTGCAGCAACCAATCCCTCCAAGGAAACATGGGAAAAGCCCGCTCGTGCGAGTGGTACCTTAGAGTCCATAGTAAACCAAGCAACTAGCTTTCCACACCGTGGAAAATCACCCTTTCTCGCCAGTGGTGGTGTCTACGGGAACATGTTAGTCCCATGGCTTGACCCACATCGTGCAGCAGCCATCGCTGCCGCTGCCAACGGCCTAACTGTTGATACGCTGGTTCCCTGCTCCAATATCACAAAGGAGCAGAGAAGTCAGGCAATGGATCCAATCCCCAGAGGAGGGATTGGATCATGCATGGTTGGTGGTCCTACACCTGTAGGGTCATGTAGCGCTGTCGTGGCCGAGGAAGGTGGACTCCTTGCTGCGGCAAAGCGTGGAAGAGTGGCACAGGTGGCGGGGAGCGGTAGGGATCAAAGTTTGAGTAACAGCGCAACTTTTGGGAGGCAAAGTCAGCAAGTTACATTAGATACGTACGACAGGGAATTTGGTAAGACTGGTTTCACTTCAACTTCAGTAGCATCAATGGATAATACAAGCTCTGAAAAACAGTGCACCAGGACCACCACCGTAGATGACCATGACTCTGTTTGCCACAGCAGACCAACAAGGAAGGATGCTGACGAGGATGAGAAAAAGAGAGAAGCTCGAAAATCATCCGTGTCCACAAAAAGGAGTAGAGCTGCAGCTATTCACAACCAATCTGAAAGGAAAAGAAGGGATAAGATAAATCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACAGATAAAGCTTCAATGTTGGATGAAGTGATAGAATATCTAAAACAATTGCAAGCACAAGTGCACATGGTGAATAGATTCAACATGTCGTCGATGATGATGCCGATGACCATGCAGCAACAACTTCAAATGTCGATGATGAATCCAATGGGCATGGGAATGGGGATGGGTATGGCCGGGATGGGCATGGGCATGGGGATGCCGGGCATGGGAATGGATATGAACACCATGAATCGAGCTAACATTCCTGGAATGCCGCCCATTCTCCATCCTTCTGCATTCATGCCTATGGCTGCTTCATGGGATGCCGGAGGCAGTAGCGACCGACTTCAAGGACCTCCACCAAACGGGATGGCTGACCCTCTCTCCACATTTTTTGGATGCCAATCACAGCCCATGACCATGGATGCCTATAGTAGGATTGCTGCCATGTATCAGCATATGCAACAACAACAACCTCCAGGAGCACCAGGTTCAAAGAGTTGA 1473 0.4834 MSQCVPSWDVDENPPPLPRTLSLRSSSNSTATLDVPMLDYDVAELTWENGQISMHGLGLPKVPVKPPSTTAATNPSKETWEKPARASGTLESIVNQATSFPHRGKSPFLASGGVYGNMLVPWLDPHRAAAIAAAANGLTVDTLVPCSNITKEQRSQAMDPIPRGGIGSCMVGGPTPVGSCSAVVAEEGGLLAAAKRGRVAQVAGSGRDQSLSNSATFGRQSQQVTLDTYDREFGKTGFTSTSVASMDNTSSEKQCTRTTTVDDHDSVCHSRPTRKDADEDEKKREARKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVHMVNRFNMSSMMMPMTMQQQLQMSMMNPMGMGMGMGMAGMGMGMGMPGMGMDMNTMNRANIPGMPPILHPSAFMPMAASWDAGGSSDRLQGPPPNGMADPLSTFFGCQSQPMTMDAYSRIAAMYQHMQQQQPPGAPGSKS* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2575 490 Gene3D - 292 357 IPR036638 GO:0046983
Tpr6g2575 490 PANTHER TRANSCRIPTION FACTOR UNE10 1 486 - -
Tpr6g2575 490 Coils Coil 303 323 - -
Tpr6g2575 490 MobiDBLite consensus disorder prediction 205 223 - -
Tpr6g2575 490 Pfam Helix-loop-helix DNA-binding domain 302 347 IPR011598 GO:0046983
Tpr6g2575 490 MobiDBLite consensus disorder prediction 300 315 - -
Tpr6g2575 490 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 297 346 IPR011598 GO:0046983
Tpr6g2575 490 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 295 360 IPR036638 GO:0046983
Tpr6g2575 490 MobiDBLite consensus disorder prediction 257 292 - -
Tpr6g2575 490 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 486 IPR031066 -
Tpr6g2575 490 CDD bHLH_AtPIF_like 297 352 - -
Tpr6g2575 490 MobiDBLite consensus disorder prediction 243 315 - -
Tpr6g2575 490 SMART finulus 303 352 IPR011598 GO:0046983
Tpr6g2575 490 MobiDBLite consensus disorder prediction 66 85 - -
Tpr6g2575 490 MobiDBLite consensus disorder prediction 203 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2575 Tpr-Chr6 28149613 28156864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2575 1 468 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 44.515 2.60e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr6g2575 HLH 7.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2575 - - gmx:100798775 566.614