Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2571 ATGGACTTTGGAGGGAACATGTTCTGTCTCAACAACAGAGACCAAAGTAATAACAATAACGGTAACAGTAACGGTTTTACTACTTGGGGTAGTACCAGTAATGGTACTCCTGCTACTGCATGGAACATGGACATTTTCCATGTTCCAGTTGAAAACACCGCCGTTAGTAACCATCACGATTCTGATTTAAGCAACGTGATGATGTTTAACGGCGGTGGTGACAGACATCATAGAGGGAGCTATATGGAACCGTATGGAAGAGGTGGGTCAGGGTCTCACGTGATGCCTGACCCACATCTCACATGTTTGAAGTTAGGGAAGAGACATTATTTTGAGGATGTGAATGGTGGTGGTGGTGGTGGTGGAGGGTTGGGAGATAAGAGAGGAAAAGGGTACTGTGGTGGTGGTGGTGGGAAGGTGGCTGCGGCAAGTTTTGCGGTGGCGAGATGTCAGGTGGATGGATGCCACGTGGCATTGATGAATGCTAAGGAGTATCATAGGAGACATAAGGTTTGTGAGATGCATTCGAAGGCACCAAAAGTTGTGGTTTTGGGTTTAGAGCAGAGATTCTGCCAGCAGTGTAGCAGGTTCCATGTTGTGTCAGAATTTGATGATTCAAAGAGAAGTTGTAGAAGGAGACTTGCAGGGCACAATGAGAGAAGAAGAAAGAGCTCCCAAGATTCTGTTGCGAGGAATTCCTCACAAGGCGGGTGTGCTCTCTCTCTTCTGTCATCTCGGACTGATTCTTGGCTTTCACCTGCTGATCTCTCCGTAAGATGCAGTGCTGCGTTAAGCGAATTGATAGCAGAAAATCGGGCAGCAATCATGGCTAGGCAATATGTCTCAGATAGAGACTGGCATTTGCACCACCATGCCGTGGAAGACTACAGGGAGATCCAGCCCGAGTCGAATTATTTCCCACAACAAATGTTTCCTCAGACGCACTAG 948 0.4726 MDFGGNMFCLNNRDQSNNNNGNSNGFTTWGSTSNGTPATAWNMDIFHVPVENTAVSNHHDSDLSNVMMFNGGGDRHHRGSYMEPYGRGGSGSHVMPDPHLTCLKLGKRHYFEDVNGGGGGGGGLGDKRGKGYCGGGGGKVAAASFAVARCQVDGCHVALMNAKEYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSQDSVARNSSQGGCALSLLSSRTDSWLSPADLSVRCSAALSELIAENRAAIMARQYVSDRDWHLHHHAVEDYREIQPESNYFPQQMFPQTH* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2571 315 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 44 315 - -
Tpr6g2571 315 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 315 IPR044817 GO:0003677
Tpr6g2571 315 ProSiteProfiles Zinc finger SBP-type profile. 147 224 IPR004333 GO:0003677
Tpr6g2571 315 Gene3D - 141 211 IPR036893 GO:0003677|GO:0005634
Tpr6g2571 315 Pfam SBP domain 150 223 IPR004333 GO:0003677
Tpr6g2571 315 SUPERFAMILY SBT domain 148 229 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2571 Tpr-Chr6 28099384 28103155 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2571 102 223 SBP-box Gene Family AT1G27360 56.911 2.37e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tpr6g2571 SBP 5.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2571 - - cam:101496293 421.394