Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2570 ATGGCACGCTCCAGGTCCACCGCGCAGCGTCTTCTATACGCACTCCGCACCGCCACCACCACCACCACAGTCTCTCCATCTCCAACAAGCTCCCTAATCGGCGGCACTTTCCACCTCCGACACTTCTCAGCCGGGAACGTTGCCCGCGCAAAGGCAGCAACAATTGACAAGGATCCATGGTGGAAGGAATCGATGGAAATGACTCGTAATATCGGGATCTCGGCACATATTGATTCCGGGAAGACGACATTGACAGAGCGGATACTGTTTTATACTGGTCGGATCCATGAGATTCATGAGGTGAGGGGAAAGGATGGCGTTGGTGCTAAGATGGATTCTATGGAGTTGGAGAGAGAGAAGGGAATTACTATTCAATCTGCTGCTACTTATTGCACTTGGAAAGACTACAAGGTCAACATAATTGACACACCTGGTCATGTTGATTTCACCATTGAGGTTGAGAGGGCTTTACGTGTCCTTGATGGTGCCATTCTTGTTTTTTGTAGTGTTGGTGGGGTGCAAAGTCAGTCCATTACTGTTGATCGGCAAATGAAAAGATATGAGGTTCCAAGACTTGCATTTATTAACAAGCTTGATCGAATGGGAGCGGATCCGTGGAAAGTTTTAAATCAGGCTAGATCTAAGCTTCGCCATCATAGTGCTGCGGTTCAAGTTCCAATAGGTTTGGAAGATGATTTTAAGGGACTTATTGATCTTGTGAAGTTAAAGGCCTATTATTTCCATGGTCCAAATGGTGACAAACTTGAAATTGAAGAAGTGCCTTCAGATATGTTAGCCTTGGTGGCAGAAAAAAGACGTGAACTAATAGAAACTGTGTCAGAGGTTGATGATATACTTGCTGAAGCGTTTCTTAGTGATGAGACCATTTCAGATGCTGATCTTGAGGGAGCAATTCGTAGGGCTACCACTGCGCGGAAATTTATACCAGTATTCATGGGTAGTGCTTTCAAAAACAAGGGGATACAGCCACTTCTGGATGGTGTACTTAGTTATTTGCCATGTCCAGTTGAAGTTAATAATTATGCTCTTGATCAATCTAGCAATGAGGAGAAGGTTGAGCTGACTGGAAATCCTGATGGTCCCCTTGTAGCATTGGCTTTCAAGTTAGAGGATAGGAAGTTTGGTCAGTTAACATATTTAAGAATTTATGAGGGCGTCATTCGGAAGGGTGATTCTGTTATTAATGTTACCACTGGCAAGAAGACCAAGATTCCTCGATTGATTCGGATGCATTCTAATGAGATGGAGGACATTGAAGAGGCCCATGCTGGCCAAATAGTTGCTGTATTTGGTGTTGATTGTGCATCAGGAGATACTTTTACTGATGGGTCGGTTAAATACACAATGACTTCTATGAGTGTTCCCGAGCCTGTGATGTCATTAGCTGTGCAGCCAATCTCAAAAGATTCTGGAGGGCAATTTTCAAAAGCTTTGAACCGCTTCCAAAGAGAGGATCCTACTTTCCGTGTTGGTTTGGACCCAGAGAGTGGGCAGACAATCATTTCTGGAATGGGAGAACTGCACTTGGATATTTATGTTGAACGCATTAGGAGGGAGTACAAGGTTGATGTTTCAGTCGGAAAGCCACGAGTAAACTTCAGAGAAACTGTTACTCAACGTGCTGATTTTGATTATTTACATAAGAAGCAAAGCGGAGGGCAAGGACAATATGGACGGGTGATTGGGTATATTGAACCACTTCCTGCTGGGTCAGAAACTAAGTTTGAATTTGAAAACATGCTTGTTGGTCAAGCTGTTCCATCAAACTTTATCCCTGCAATCGAGAAAGGTTTTAAAGAAGCTGCCAACTCTGGTGCCTTAATTGGACATCCAGTAGAAAATCTCCGAGTTGTCTTGACAGATGGTGCTGCTCATGCTGTTGATTCCAGTGAACTTGCCTTTAAGATGGCTTCTATCTATGCTTTTAGACAGTGTTATGCAGCTTCCAGGCCAGTTATATTAGAACCTGTTATGCTTGTTGAGCTGAAAGTACCAACAGAATTTCAGGGATCTGTTGCTGGTGACCTCAACAAGAGAAAAGGTGTGATTGTTGGCAATGATCAGGACGGAGATGACTCTGTCATTACAGCTCATGTCCCTCTTAACAATATGTTTGGGTATTCTACATCTCTTCGTTCGATGACACAGGGAAAGGGTGAATTCACAATGGAATATAAGGAACATTCACCGGTTTCTCGTGATGTACAGACCCAATTGATAAACACATACAAGGGCAATAAGCCGGCGGATGAATGA 2277 0.437 MARSRSTAQRLLYALRTATTTTTVSPSPTSSLIGGTFHLRHFSAGNVARAKAATIDKDPWWKESMEMTRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGKDGVGAKMDSMELEREKGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVFCSVGGVQSQSITVDRQMKRYEVPRLAFINKLDRMGADPWKVLNQARSKLRHHSAAVQVPIGLEDDFKGLIDLVKLKAYYFHGPNGDKLEIEEVPSDMLALVAEKRRELIETVSEVDDILAEAFLSDETISDADLEGAIRRATTARKFIPVFMGSAFKNKGIQPLLDGVLSYLPCPVEVNNYALDQSSNEEKVELTGNPDGPLVALAFKLEDRKFGQLTYLRIYEGVIRKGDSVINVTTGKKTKIPRLIRMHSNEMEDIEEAHAGQIVAVFGVDCASGDTFTDGSVKYTMTSMSVPEPVMSLAVQPISKDSGGQFSKALNRFQREDPTFRVGLDPESGQTIISGMGELHLDIYVERIRREYKVDVSVGKPRVNFRETVTQRADFDYLHKKQSGGQGQYGRVIGYIEPLPAGSETKFEFENMLVGQAVPSNFIPAIEKGFKEAANSGALIGHPVENLRVVLTDGAAHAVDSSELAFKMASIYAFRQCYAASRPVILEPVMLVELKVPTEFQGSVAGDLNKRKGVIVGNDQDGDDSVITAHVPLNNMFGYSTSLRSMTQGKGEFTMEYKEHSPVSRDVQTQLINTYKGNKPADE* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2570 758 TIGRFAM small_GTP: small GTP-binding protein domain 68 240 IPR005225 GO:0005525
Tpr6g2570 758 TIGRFAM EF-G: translation elongation factor G 64 751 IPR004540 GO:0003746|GO:0005525|GO:0006414
Tpr6g2570 758 Pfam Elongation factor G, domain IV 536 656 IPR005517 GO:0005525
Tpr6g2570 758 CDD EF-G 70 342 - -
Tpr6g2570 758 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 112 127 IPR031157 -
Tpr6g2570 758 Gene3D - 542 747 IPR014721 -
Tpr6g2570 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 340 IPR027417 -
Tpr6g2570 758 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 3 756 - -
Tpr6g2570 758 Pfam Elongation factor G C-terminus 660 745 IPR000640 -
Tpr6g2570 758 SUPERFAMILY EF-G C-terminal domain-like 459 536 IPR035647 -
Tpr6g2570 758 SUPERFAMILY Ribosomal protein S5 domain 2-like 536 658 IPR020568 -
Tpr6g2570 758 SUPERFAMILY EF-G C-terminal domain-like 662 750 IPR035647 -
Tpr6g2570 758 Gene3D Elongation Factor G (Translational Gtpase), domain 3 468 541 - -
Tpr6g2570 758 CDD mtEFG1_C 662 739 IPR035649 -
Tpr6g2570 758 Pfam Elongation factor Tu GTP binding domain 68 340 IPR000795 GO:0003924|GO:0005525
Tpr6g2570 758 CDD EFG_mtEFG1_IV 540 655 IPR005517 GO:0005525
Tpr6g2570 758 CDD mtEFG1_II_like 369 449 - -
Tpr6g2570 758 SUPERFAMILY Translation proteins 307 459 IPR009000 -
Tpr6g2570 758 PRINTS GTP-binding elongation factor signature 70 83 IPR000795 GO:0003924|GO:0005525
Tpr6g2570 758 PRINTS GTP-binding elongation factor signature 119 127 IPR000795 GO:0003924|GO:0005525
Tpr6g2570 758 PRINTS GTP-binding elongation factor signature 139 149 IPR000795 GO:0003924|GO:0005525
Tpr6g2570 758 PRINTS GTP-binding elongation factor signature 155 166 IPR000795 GO:0003924|GO:0005525
Tpr6g2570 758 PRINTS GTP-binding elongation factor signature 191 200 IPR000795 GO:0003924|GO:0005525
Tpr6g2570 758 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 3 756 IPR045044 -
Tpr6g2570 758 Hamap Elongation factor G [fusA]. 64 750 IPR004540 GO:0003746|GO:0005525|GO:0006414
Tpr6g2570 758 Pfam Elongation Factor G, domain III 461 535 IPR041095 -
Tpr6g2570 758 Pfam Elongation factor Tu domain 2 382 448 IPR004161 GO:0005525
Tpr6g2570 758 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 66 343 IPR000795 GO:0003924|GO:0005525
Tpr6g2570 758 Gene3D Translation factors 350 467 - -
Tpr6g2570 758 SMART EFG_C_a 659 746 IPR000640 -
Tpr6g2570 758 Gene3D - 663 733 - -
Tpr6g2570 758 Gene3D - 61 346 IPR027417 -
Tpr6g2570 758 SMART EFG_IV_2 537 657 IPR005517 GO:0005525
Tpr6g2570 758 CDD EFG_III 462 537 IPR009022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2570 Tpr-Chr6 28073086 28087250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2570 384 544 Eukaryotic Initiation Factors Gene Family AT3G22980 24.157 2.02e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2570 K02355 - gmx:100783315 1330.85