Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2564 ATGAACCTGAGATACGAACAGAGGCTTCAAGTCGCTGCTAGAATAATACTTGACGACGATGCAAGTTCCTGTGACGCGCCGCCGAGTGAAGAAGAGCTCGGGATTAGGGCAACACTGAAGCCTCACCAAGTTGAAGGGGTTTCGTGGCTCATTCGGAGGTATAAACTCGGCGTTAACGTTGTTCTCGGGGATGAGATGGGATTGGGCAAGACATTGCAAGCTATCTCATTTTTAAGCTATTTGAAAGTGCACCAGTTGTCACATGGGCCATTTTTGGTTATATGTCCTTTAAGTGTGACAGATGGTTGGGTATCTGAGATAGTCAAATATGCCCCGAAACTAGAAGTCCTTAAATATGTTGGTGATAAAGATTGTAGGCGAAGTTTACGTATGAAAACACATGAGCATGTAACAAGGCAGCCAACAGATAATGCCATTTTGCCTTTTGATGTGCTGTTAACATCATATGACATTGCACTGATGGATAAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATCGATGAAGCCCAAAGGCTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGACCGCTATATCATGCCAAGACGGTTGTTGATGACGGGCACACCTATTCAGAATAACCTTTCTGAACTGTGGGCGTTGATGTATTTTTGCATGCCATCTGTCTTTGGGACACTAGATCAGTTCCTTTCTACATTCAGGGACATCAGTGATCTTACCTCAGTTCATGATTCTCCAAAGGTAAAGGAGCGACTTCAAATCCTGAGAAATGTATTGACTGCTTTTATGCTACGACGAACCAAATCAAAGCTTATGGAGTCCGGAAGTTTAGTGCTGCCACCTCTCACTGAGACAACAGTGTTAGTACCCCTTGTCAGCCTGCAAAAAAAGGTCTGCATGTCGATACTGAGGAAAGAACTTCCGAAGCTAGTTGCACTATCTTCTGGAACATCAAATCACCAATCATTACAGAATACTGTATTACAACTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCGGGTATTGAACCCGAACCTTACGAAGAAGGTGAACATCTGATTCAGGCCAGTGGTAAGCTATTGATTCTGGACCAACTTCTTAGAAAGCTACATCATTATGGCCATCGTGTTCTTCTTTTTGCTCAGATGACACATACACTTGACATTTTGCAGGATTTTCTGGAGTTACGTAAGTATTCTTATGAGCGTCTTGATGGATCAATTAGAGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGCAACTCATCAGCTAATACAGGCTTGAATTTTGAAGCTGACCAAAATGGAGCTTTTGTTTTTATGATCTCAACAAGAGCTGGGGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCGCAGGTGGACAGACAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAATCATGTTTTGTGTATAAACCTTGTTACTGAACATACAGTGGAGGAAGTAATTATGCGGAGGGCAGAAAGAAAATTGCAGCTGAGCCTCAATGTTACAGGTGATAATATTCTGGAACATGATGATAAAAATTTAACTGAAGTTGGAACTAGTGATTTGAAATCCATCATAGTTGGGTTGCGTATGTTTGATCCCAATGAGATCAATGATGGAAAAGACAAGGAAATGGACTTAACAGAAATTAATGCAATGGCTGACAAGGTGATTGCTATTCGTGATGAACAAACATTTGATAAGGATGACAGGAAATTTGAGGTCAATCCAAGAAACGTTTTAAAAGGATATGATGTTAAGGAAAGAGGTTCTGCTTCTCTCTCTTGTGATCTTGATCTTGATGAAGCTTCTTATCTCTCTTGGGTTAAAAAATTTGAGGAAGTTTCTAAATCAAGTTGTGACTCAATCATTGACTTGAGAAGCAGAAGGAACTTAGATGAGGAAAAGAGTCAAAAACTTGAGATTGCAAAGAAGAAGGCAGAAGAAAAGAAGCTGTCTAAGTGGGACGCTGCTGGATACCATTCATTGAATGTGAATGAACCTATTAGCCCTCCAGATGACGATATCATATTAGATGCTGGTTCTGTTCATTTTGTGTATGGAGATTGTACAGCTCCCTCAAATGTTTCTTCATCTGAACCAGCCATAATCTTCAGCTGTGTTGACACCTCTGGACGCTGGGGCCATGGTGGAATGTTTGATGCACTAACTAAACTTTCATCAAGCATCAGTGAAGCATATGAACGGGCATCTGAACACGGGGACCTGCATCTTGGTGATCTCCATCTTATAAGGCTTGAAGATGGCAGTGATGATCAAAATTTGGATGGTAATGCTTCCAACATGGTTGCTTTAGCTGTGATTCAATCTTACAACCCAAGGCGTAAAATCCCTCGAAGTGAAATCTCACTTGTCCACTTGGAAAGCTGCTTATCAAAAGCAGCGTTCTCAGCCGCTCAAAATTCTGCATCAATACACATGCCACGGATTGGTTATCAAGATGGATCTGATCGTTCTCAATGGTACACCATAGAACGGCTTCTAAGAAAATATGCCTCCATGTACAACATAAGTATATACGTGTATTATTATCGAAAATCACGTTAA 2637 0.4103 MNLRYEQRLQVAARIILDDDASSCDAPPSEEELGIRATLKPHQVEGVSWLIRRYKLGVNVVLGDEMGLGKTLQAISFLSYLKVHQLSHGPFLVICPLSVTDGWVSEIVKYAPKLEVLKYVGDKDCRRSLRMKTHEHVTRQPTDNAILPFDVLLTSYDIALMDKDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFRDISDLTSVHDSPKVKERLQILRNVLTAFMLRRTKSKLMESGSLVLPPLTETTVLVPLVSLQKKVCMSILRKELPKLVALSSGTSNHQSLQNTVLQLRKACSHPYLFPGIEPEPYEEGEHLIQASGKLLILDQLLRKLHHYGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSNSSANTGLNFEADQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDRQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNILEHDDKNLTEVGTSDLKSIIVGLRMFDPNEINDGKDKEMDLTEINAMADKVIAIRDEQTFDKDDRKFEVNPRNVLKGYDVKERGSASLSCDLDLDEASYLSWVKKFEEVSKSSCDSIIDLRSRRNLDEEKSQKLEIAKKKAEEKKLSKWDAAGYHSLNVNEPISPPDDDIILDAGSVHFVYGDCTAPSNVSSSEPAIIFSCVDTSGRWGHGGMFDALTKLSSSISEAYERASEHGDLHLGDLHLIRLEDGSDDQNLDGNASNMVALAVIQSYNPRRKIPRSEISLVHLESCLSKAAFSAAQNSASIHMPRIGYQDGSDRSQWYTIERLLRKYASMYNISIYVYYYRKSR* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2564 878 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 4 873 - -
Tpr6g2564 878 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 541 IPR001650 -
Tpr6g2564 878 Coils Coil 653 673 - -
Tpr6g2564 878 SMART helicmild6 395 490 IPR001650 -
Tpr6g2564 878 SMART ultradead3 35 235 IPR014001 -
Tpr6g2564 878 Gene3D Leucine Aminopeptidase, subunit E, domain 1 705 878 IPR043472 -
Tpr6g2564 878 SUPERFAMILY Macro domain-like 706 873 IPR043472 -
Tpr6g2564 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 537 IPR027417 -
Tpr6g2564 878 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 227 IPR014001 -
Tpr6g2564 878 PANTHER HELICASE CHR10-RELATED 4 873 - -
Tpr6g2564 878 Gene3D - 284 596 IPR027417 -
Tpr6g2564 878 Gene3D - 15 283 IPR038718 -
Tpr6g2564 878 Pfam Helicase conserved C-terminal domain 366 490 IPR001650 -
Tpr6g2564 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 272 IPR027417 -
Tpr6g2564 878 CDD Macro_Poa1p-like_SNF2 705 863 - -
Tpr6g2564 878 CDD SF2_C_SNF 364 501 - -
Tpr6g2564 878 Pfam SNF2-related domain 57 345 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2564 Tpr-Chr6 28009330 28021070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2564 19 549 RAD5 or RAD16-like Gene Family AT1G02670 24.441 1.55e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr6g2564 SNF2_N 8e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2564 K20092 - gmx:100797182 1373.99