Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2556 ATGGGGAGCATGGGTGAGCATGATAGAAAACGGCGTTTTAGCTCTTTATCACCTACACCTGCAATTGCCAAGAAGTTACCATTCTTGCCAGTTTCTGAAGACAAAAAGCTTGATATTGCTGTACTTCAGTATCAAAACCAAAAGCTCACACAGAAATTAGAGACTCAGAAGTTAGAATATACAGCTCTTGAGAATAAATTTTCTCAACTGAAGGAGAGGCAACAGTCGTATGATTCTACCTTAGCAGTGGTCAAGAAGTCTTGGCAGCAGCTGGTTAATGATTTAGAGTCACGTTCTGAATGCACAAGGGAGTCTAGCCGCAAAGCAGATTCCAGTTTTGCATCAAGCTCAAATGGTTCTTCGTCTACTGTTCAAGATGTTTTTCTTAGCCGACTTTTGCAAACTGGTGCTACTGAAAATTCCTCCTCTAACCACTTTGCAAACGAGATGGAACAACATAGAGAAATGACTGCTGAAAAAGTTAAAAGCATTTTGAATAATATATTGACATCTAGTAATAACTTTCATTGTCTGAAAGATGGATTTCATACTGCACTACTGCAAAAGCTTCGAGAAGATGTTTCATGTGGGCAGATGCTATCCAATGATCTGGAGCTGGAAAGTAAAAACTTGAGATTGGCATTAAGTGAACTTCACTTAAAGCACAAGTCGTTAGCAAGTGATTTCCGAATTCAGAGGGATCTGGATGCCAAAAATAAAGCTGAGCTTAAACGATTAAAAGGGGAACTGGAAGGCACAGTTGCGGAGTTAGAAGAAATCAATCACAACCTTGCAACTCTTAAGGTAGAGAAAGATGCAGCCAAAGGGGCAATTCTCCCAGTATTAGCTGTTGGGAATACACATATTCCAAATGATAAGATCAAAGACAAACAAAAGGATTTACAAGATATGGAATCTACTTTGAAGGAGCTATTGGACCGAGCTTCAACACGATTAGTGGAACTGAAACGTCTTCACGAGGAAAGAATAAGGTTATTACAGCAATTGTGCGATATACAGAATACAGTGAAGAATTTGAAGTGTATTACCTCTTCCCATGCATTCCAATTGGTTAGAGATCAGATAGAAAAATCAAAATCTGAAGTGCAGGAGTATCAGGCCTTATATGAGAAACTACAGGCTGAGAAGGATAATCTTGCATGGAAGGAAAGGGAGTGGTACATTAAAAATGATTTAGCTGATCTTTTTCAAAGATCTGTGACAGTTTCTGATCTTAGAGTGGCTGATATACGCACTGAGATACAGAAAGCGATTGAGCAAAGAAATGTGATTGAAAATAGGCTGAAAGAGGAAGCAAGAGAACCAGGAAGGAAAGAAATTATTGCCGAATTTAAATCTCTGCTTTCTTCGTTTCCTGATGAAATGGGATCCATGCAAAGTCAACTTACTAAATATAAAGAATCAGCTTCAGATCTCCATTCTTTGCATGCAAATGTGCATTCTATTTCCAGTATCCTTGATCAGAAGGTAAAAGAATGTGATGCATTATCGGTTAGGTCTGCAGATCAACTTGCTGAGATAAACAGACTGCATGTTGTGGTTCAAGATTTGCGAGTGACTGAGGATGAGATGAAGTTGATACTGCAAATGTATAGACACGAGACCATTGATTCAAGGGATGTCATGGAAGCAAGGGAAGCAGAATACAGAGCATGGGCACATGTTCAAAGTTTGAAATCATCTCTTGATGAGCACAATTTAGAACTTCGAGTAAAAACAGCAATTGAATCAGAGGCCAGATCACAGCAAAAACTTGCTGCGGCTGAAGCTGAGATTGCAGAGATGAGACATAAATTAGATGATTCTAAAAGGGAGATGGGTAAATTGTCTAATGTCTTGAGATCTAAAAATGAAGAAAATGAAGCCTACTTATCTGAAATAGAGACAATTGGACAAGCATATGATGATATGCAAACCCAAAACCAGCATCTGTTGCATCAGATTACTGAGAGAGATGATTACAATATTAAGCTTGTTTTAGAAGGTGTAAGGGCTAGACAAAAAACCGATTCTTTGATCATGGAGAAGCAATTAATGGAACAAGAGATCCAGCAATCAAATGTCTCTCTGAATTTATATGATACGAAAGCTGCAAGAATTGAAGACCAGATTCAAAAACTTAAGGACAATAAACATCAAAGTTCTGTCGGTTTGGAAAATGCACAAAGAAGGCTGTCGGATATTAAACCATCATCGCAACAAGTTAGGGATACAGTGGTGGAAGTGCAATCTAAAATTACAAGTAGTCGGGTGACTTGTATGGAGTTAGAAGTAGAACTCGATAAAGAAAGGTTTGACAAAAAAAAAGTAGAAGAAGATCTGGAGGTTGCTAAGAGAAACTTGTCACGTCTTAAAGCACAAGATGAGGATTCCTCAGTAACTGATAAGCTTCAACAGGAACTGGGAGAGTACAGGGAAATTGTCAAGTGCAGTATCTGTCGAGACAAGACAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCAACTCATGTATCCAGAAAGTTGCTGGGAGTCGACAGCGCAAATGTCCACAATGTGGTGCATGCTTTGGGGCTAATGATGTTAAGCCGGTTTATTTGTAA 2610 0.3877 MGSMGEHDRKRRFSSLSPTPAIAKKLPFLPVSEDKKLDIAVLQYQNQKLTQKLETQKLEYTALENKFSQLKERQQSYDSTLAVVKKSWQQLVNDLESRSECTRESSRKADSSFASSSNGSSSTVQDVFLSRLLQTGATENSSSNHFANEMEQHREMTAEKVKSILNNILTSSNNFHCLKDGFHTALLQKLREDVSCGQMLSNDLELESKNLRLALSELHLKHKSLASDFRIQRDLDAKNKAELKRLKGELEGTVAELEEINHNLATLKVEKDAAKGAILPVLAVGNTHIPNDKIKDKQKDLQDMESTLKELLDRASTRLVELKRLHEERIRLLQQLCDIQNTVKNLKCITSSHAFQLVRDQIEKSKSEVQEYQALYEKLQAEKDNLAWKEREWYIKNDLADLFQRSVTVSDLRVADIRTEIQKAIEQRNVIENRLKEEAREPGRKEIIAEFKSLLSSFPDEMGSMQSQLTKYKESASDLHSLHANVHSISSILDQKVKECDALSVRSADQLAEINRLHVVVQDLRVTEDEMKLILQMYRHETIDSRDVMEAREAEYRAWAHVQSLKSSLDEHNLELRVKTAIESEARSQQKLAAAEAEIAEMRHKLDDSKREMGKLSNVLRSKNEENEAYLSEIETIGQAYDDMQTQNQHLLHQITERDDYNIKLVLEGVRARQKTDSLIMEKQLMEQEIQQSNVSLNLYDTKAARIEDQIQKLKDNKHQSSVGLENAQRRLSDIKPSSQQVRDTVVEVQSKITSSRVTCMELEVELDKERFDKKKVEEDLEVAKRNLSRLKAQDEDSSVTDKLQQELGEYREIVKCSICRDKTKEVVITKCYHLFCNSCIQKVAGSRQRKCPQCGACFGANDVKPVYL* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2556 869 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 1 869 - -
Tpr6g2556 869 Coils Coil 39 73 - -
Tpr6g2556 869 Coils Coil 414 441 - -
Tpr6g2556 869 SUPERFAMILY RING/U-box 809 868 - -
Tpr6g2556 869 CDD RING-HC_BRE1_like 815 856 - -
Tpr6g2556 869 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 798 869 IPR013083 -
Tpr6g2556 869 ProSiteProfiles Zinc finger RING-type profile. 817 855 IPR001841 -
Tpr6g2556 869 ProSitePatterns Zinc finger RING-type signature. 832 841 IPR017907 -
Tpr6g2556 869 PANTHER RING FINGER PROTEIN-RELATED 1 869 IPR013956 GO:0004842|GO:0010390
Tpr6g2556 869 Coils Coil 294 314 - -
Tpr6g2556 869 Coils Coil 697 731 - -
Tpr6g2556 869 SMART ring_2 817 855 IPR001841 -
Tpr6g2556 869 Coils Coil 585 626 - -
Tpr6g2556 869 Coils Coil 355 392 - -
Tpr6g2556 869 Coils Coil 760 794 - -
Tpr6g2556 869 Coils Coil 240 277 - -
Tpr6g2556 869 Pfam Zinc finger, C3HC4 type (RING finger) 817 855 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2556 Tpr-Chr6 27883173 27899542 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2556 773 868 C3H Transcription Factor Family AT2G42030 30.928 2.65e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2556 K10696 - gmx:100790337 1256.12