Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2555 ATGGAAAATGATGCTAGTGAAAACATCTTTAGCACATCCTCATCCTCCTCAACATCATCAACACCAACATCACCAACATCTTCTATCTCAAATTCATGCACCAATCAAAATCAAGACACTAAAAATAGTCCTCAAAATGAAACAAAGTGCAAGAAAAGAGAGAGAAGTGAAAAAGACACAAAACACCCTACATATAGAGGAGTAAGAATGAGAGCATGGGGAAAATGGGTTAGTGAAATACGTGAGCCAAGAAAAAAGTCAAGAATATGGCTTGGGACATACCCTACAGCTGAAATGGCAGCTAGAGCTCATGATGTAGCTGCTTTAGCTATAAAGGGTCATTCAGCTTATCTCAATTTCCCAAATTTGGCTCAAAATCTTCCAAGGCCTTCAACTACATCACCTAAAGACATTCAAATTGCAGCTGCAAAAGCAGCATCAACTGTTTTTGTGGAAGTTAAGGATTGTTGTCAAGGTGAAAATGATCAACATGTGCAAAATCATGAAGATCAAGGTTCTTTTTCAAGTGTGTCTTCCATTGACAATGTTCAAGAGTCTAATTCAAGTTCTCCGAATTCTACTACTACTAGTACTACTACTGCTATGAATGATGATATTGATGACACGCTCTTTGATTTGCCGGATCTTTTTCTTGATGGAAAAAATGGACTTCTTTCTTTTTCTTCTTCTTGGCATTTATGTAGTGTTGATAGTGGACTTCGGCTCGAGGAGCAATTTTCGTCGTCTTGGGAGTACTACTAG 762 0.3806 MENDASENIFSTSSSSSTSSTPTSPTSSISNSCTNQNQDTKNSPQNETKCKKRERSEKDTKHPTYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPNLAQNLPRPSTTSPKDIQIAAAKAASTVFVEVKDCCQGENDQHVQNHEDQGSFSSVSSIDNVQESNSSSPNSTTTSTTTAMNDDIDDTLFDLPDLFLDGKNGLLSFSSSWHLCSVDSGLRLEEQFSSSWEYY* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2555 253 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Tpr6g2555 253 MobiDBLite consensus disorder prediction 168 201 - -
Tpr6g2555 253 Pfam AP2 domain 63 114 IPR001471 GO:0003700|GO:0006355
Tpr6g2555 253 MobiDBLite consensus disorder prediction 166 201 - -
Tpr6g2555 253 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
Tpr6g2555 253 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Tpr6g2555 253 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Tpr6g2555 253 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 253 - -
Tpr6g2555 253 MobiDBLite consensus disorder prediction 45 66 - -
Tpr6g2555 253 SUPERFAMILY DNA-binding domain 64 122 IPR016177 GO:0003677
Tpr6g2555 253 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Tpr6g2555 253 MobiDBLite consensus disorder prediction 1 44 - -
Tpr6g2555 253 PANTHER ETHYLENE RESPONSE FACTOR 9 253 - -
Tpr6g2555 253 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Tpr6g2555 253 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2555 Tpr-Chr6 27877204 27878662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2555 52 246 AP2-EREBP Transcription Factor Family AT2G44940 53.659 6.57e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr6g2555 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2555 - - gmx:100792964 272.322