Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2546 ATGGTTTCCTCATTTCCAATGCTCGTGTCCATGAAGTGTGTACTCTCTTGGCTGTTCTTTTCAATGTACTTTTGTGCATTCATAACTAGCACTTCTTCAATTGTTGGTTCTTCCCTTACAATATCATCATCTACTTCTTCATCTTTACAAAGTAGTGAAGAAGCAAGTGCTTTGTTGAAGTGGAAATCAAGTCTTGACAACCAAAGCCAAACCTTACTATCTTCATGGAATGGCAATAATTCATGCAACAACTGGCTTGGAATTACATGTGATGAAGATTCCATATATGTTACTTATGTAAATCTCACAAACTTGAGATTGAAAGGTACACTCAAAAGTCTTAACTTCACATCACTTCCAAATATTCTTACTCTTGATCTTAGTTTCAACTTCTTGAATGGAAGTATTCCTAACCATATTGGAATGTTGTCCAAACTTTCTTATCTTGATCTTAGTGACAATCTTCTCTTAGGAGAAATTCCATATGAAATAACACATTTGACTAATCTTCAAATTTTAGATTTGTCTCATAATTTTCTTAATGGTATCATTCCTAAAGGAATAGGTTCATTAAGGAATCTAAGAGAACTTCATATCTCATTTTCAAATCTAACTGGTAATATACCAATTTCAATAGGGAACTTGTCCTTCTTGTCACACTTGCATTTAGAAAGAAACAAACTTTCTGGAGAAATCCCACCTACTATTGGAAAATTAACAAAGATAAAAAATCTATATCTTCATGACAATAACCTTTCTGGATCAATTCCTCGAGAAATTGGGAAGTTATTACAGATGAAAAAATTATTTCTTTTCGATAATAATATTTATGGATCTATTCCTCGTGAAATCGGGAAATTGTTGAACATGACAAATCTACTTCTTGACAACAATAATCTTTATGGTTCCATTCCTAGTGAAATCGGAATGATAAGATCTATGAAAGACATTGATTTGTCAAATAATAGTCTCTCTGGTAAAATCCCGGCTACAATTGGAAACTGGAGCAATTTACGATATCTTGGCTTTGGTGGAAACCACCTCAGTGGGAAAATTCCGAAGGAATTGAATATGCTTGCTTCTAGTAATTTGCAAGATTTCCATGTCTATGATAATAATTTAATTGATCAGATGCCTTATAACATTTGTCGTGGCGGAAAGCTGGAATACGTTAGTGCTTTTAATAACCATTTTACAGGGTCAGTTCTAAAGAGTTTGAAGAATTGTTCTAGCCTTATTAGACTTAGGCTTGAACATAACTATTTTGATGGAAACATAACTGATGATTTTGGTGTATACCCAAATTTGATGTTTTTGGGATTGGATGACAATAATTTTTATGGCCACCTTTCATCAAACTGGGGAAAGTTTCATAACTTGACACACATTCACATCTCCAAAAATAATATCTCAGGTTGTATACCACCCGAACTCGGTGAAGCACCTAGCCTATATTCAATTGACTTATCTTCAAACCATATTACAGGAAAGATACCAAAAGAGTTAGGCAATTTGACTATGTTGGGAAGACTCTTTTTAAGCAACAACAATCTTTCTGGTAATATTCATGTACAATTAACATTATTAAAGGGACTTGAAATCTTAGATGTTGCAGCAAATAATCTAAGTGGTTTCATCACAAAAGACCTTTTCAGTTTTCCTAAATTATTGAACTTAAATTTGAGCCATAACAAATTCAGAGGAAATATTCCTGTTGAGTTTGGAAATTTTAAAGTCCTTCAAATTCTTGATCTTAGTGGAAATTTTTTGGATGGAACCATACCACCAATGCTTGGAAAGCTGAAATACTTAGAAACATTGAATATTTCACATAACAATCTTTCTGGTTTCATCCCCACTTCCTTGGATCAAATGATTAGTTTGTGGTTGGTTGATATATCATATAACCAGTTGAAAGGTCCACTTCCAAATATGCGAGCATTCAATAACGCTACATTTGAAGTGTTGAGAAATAATACAGGCTTGTGCGGTAATGTTTCTGGCTTGAAGCCCTGCATAAAACCAACTAGTGGATCTCATAATAATAAGACTAAGAAGGTGATTTTTTTCATAGTTTTACCTCTAGCACTAGGAACTCTAATGCTAGCGATCGTTTGTTTCAAGTTCTCGTATTGTTTCTACCATTCGTCAACCATAAGAGAAGACCAGGTTGAAAGAAACATCACTACTAAAAATGTATTAACAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAACATTATTGAAGCCACAGAAGAGTTTGATGACAAACATCTCATTGGAGTAGGAGCGCATGGTAGTGTTTACAAAGCAAAGTTGCAGTCAGGTCAAGTTGTTGCTGTTAAAAAACTCCATTCGGTGGCAGATGCAGAAAACCCCAATCTAAAATCATTCACAAATGAGATCCAAGCTCTAACAGAAATTCGGCATCGCAACATTGTGAAGCTATATGGATTTTGTTCACATTCACACCTGTCATTTTTGGTTTACGAGTTCATGGAGAAAGGTAGTTTGGAAAAGATTTTGAAAGATGACGAGGAAGCAATTGCATTTGATTGGAATAAGAGGGTGAATGTTATTAAAGATGTAGCTAATGCTTTATGCTACATGCACCATGATTGCTCCCCTCCGATTGTTCATCGAGATATATCAAACAAGAACATTCTTCTGGATTTAGAATATGTGGCTCGTGTCTCCGACTTTGGAACAGCTAAGCTTCTTAATCCTAATTCATCCAATTGGACCTCTTTTGCAGGCACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAAAATGATGTGTATAGTTTTGGAGTATTAGCACTGGAAATACTTTTTGGAAAACACCCTGGAGATATTGTATCTAATTCTTTACAATGGATTATCATGGGATCCACACTTGATAGTATGCCATTGATGAATAAGTTGGATCAACGTCTCTCTCGTCCGGTGAATCATCGACAAACTAAGGAGTTAGTATGCATTGCAAAGACAACAATTTCTTGTTTGGTTGATAGTCCACAATCTCGCCCTACCATGGAGCAGGTTTCTAGGGAGCTTTTAAGTGTGTAG 3093 0.3508 MVSSFPMLVSMKCVLSWLFFSMYFCAFITSTSSIVGSSLTISSSTSSSLQSSEEASALLKWKSSLDNQSQTLLSSWNGNNSCNNWLGITCDEDSIYVTYVNLTNLRLKGTLKSLNFTSLPNILTLDLSFNFLNGSIPNHIGMLSKLSYLDLSDNLLLGEIPYEITHLTNLQILDLSHNFLNGIIPKGIGSLRNLRELHISFSNLTGNIPISIGNLSFLSHLHLERNKLSGEIPPTIGKLTKIKNLYLHDNNLSGSIPREIGKLLQMKKLFLFDNNIYGSIPREIGKLLNMTNLLLDNNNLYGSIPSEIGMIRSMKDIDLSNNSLSGKIPATIGNWSNLRYLGFGGNHLSGKIPKELNMLASSNLQDFHVYDNNLIDQMPYNICRGGKLEYVSAFNNHFTGSVLKSLKNCSSLIRLRLEHNYFDGNITDDFGVYPNLMFLGLDDNNFYGHLSSNWGKFHNLTHIHISKNNISGCIPPELGEAPSLYSIDLSSNHITGKIPKELGNLTMLGRLFLSNNNLSGNIHVQLTLLKGLEILDVAANNLSGFITKDLFSFPKLLNLNLSHNKFRGNIPVEFGNFKVLQILDLSGNFLDGTIPPMLGKLKYLETLNISHNNLSGFIPTSLDQMISLWLVDISYNQLKGPLPNMRAFNNATFEVLRNNTGLCGNVSGLKPCIKPTSGSHNNKTKKVIFFIVLPLALGTLMLAIVCFKFSYCFYHSSTIREDQVERNITTKNVLTIWSFDGKMVYENIIEATEEFDDKHLIGVGAHGSVYKAKLQSGQVVAVKKLHSVADAENPNLKSFTNEIQALTEIRHRNIVKLYGFCSHSHLSFLVYEFMEKGSLEKILKDDEEAIAFDWNKRVNVIKDVANALCYMHHDCSPPIVHRDISNKNILLDLEYVARVSDFGTAKLLNPNSSNWTSFAGTFGYAAPELAYTMEVNEKNDVYSFGVLALEILFGKHPGDIVSNSLQWIIMGSTLDSMPLMNKLDQRLSRPVNHRQTKELVCIAKTTISCLVDSPQSRPTMEQVSRELLSV* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2546 1030 Gene3D Transferase(Phosphotransferase) domain 1 834 1030 - -
Tpr6g2546 1030 SMART LRR_typ_2 529 553 IPR003591 -
Tpr6g2546 1030 SMART LRR_typ_2 119 143 IPR003591 -
Tpr6g2546 1030 SMART LRR_typ_2 601 624 IPR003591 -
Tpr6g2546 1030 SMART LRR_typ_2 457 481 IPR003591 -
Tpr6g2546 1030 SMART LRR_typ_2 215 238 IPR003591 -
Tpr6g2546 1030 SMART LRR_typ_2 167 191 IPR003591 -
Tpr6g2546 1030 SMART LRR_typ_2 239 263 IPR003591 -
Tpr6g2546 1030 Gene3D Ribonuclease Inhibitor 51 211 IPR032675 -
Tpr6g2546 1030 Pfam Leucine rich repeat N-terminal domain 52 91 IPR013210 -
Tpr6g2546 1030 Gene3D Phosphorylase Kinase; domain 1 715 833 - -
Tpr6g2546 1030 ProSiteProfiles Protein kinase domain profile. 755 1028 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2546 1030 Gene3D Ribonuclease Inhibitor 216 289 IPR032675 -
Tpr6g2546 1030 Gene3D Ribonuclease Inhibitor 290 359 IPR032675 -
Tpr6g2546 1030 ProSitePatterns Tyrosine protein kinases specific active-site signature. 879 891 IPR008266 GO:0004672|GO:0006468
Tpr6g2546 1030 Pfam Leucine rich repeat 580 638 IPR001611 GO:0005515
Tpr6g2546 1030 SUPERFAMILY L domain-like 77 422 - -
Tpr6g2546 1030 ProSitePatterns Protein kinases ATP-binding region signature. 761 784 IPR017441 GO:0005524
Tpr6g2546 1030 SUPERFAMILY Protein kinase-like (PK-like) 734 1027 IPR011009 -
Tpr6g2546 1030 Pfam Protein kinase domain 756 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2546 1030 SUPERFAMILY RNI-like 316 644 - -
Tpr6g2546 1030 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 244 1028 - -
Tpr6g2546 1030 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 195 282 - -
Tpr6g2546 1030 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 14 195 - -
Tpr6g2546 1030 Pfam Leucine Rich Repeat 169 191 IPR001611 GO:0005515
Tpr6g2546 1030 Gene3D Ribonuclease Inhibitor 360 674 IPR032675 -
Tpr6g2546 1030 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 244 1028 - -
Tpr6g2546 1030 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 195 282 - -
Tpr6g2546 1030 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 14 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2546 Tpr-Chr6 27809201 27817511 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2546 34 927 Receptor kinase-like Gene Family AT4G08850 45.435 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr6g2546 Pkinase 5.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2546 - - mtr:MTR_7g039330 1132.47