Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2545 ATGCTTGTGTCCATGGAGTGTGTACTCTGTTGGCTGTTTTTTTCAATGTACTTATGTGCACTCATAACTAGCCCTACTTCTTCTTCTTCTTCCCTGACAATTTCATCTACTTCTTCATCTTTAAAAAGTAGAGAAGCAAGTGCTTTGTTGAAGTGGAAAACAAGTCTTGACAACCAAAGCCAAACCTTACTATCATCATGGAATGGCAATAACTCATGCAACTGGCTTGGAATTACTTGTGATGAAGATTCCATCTATGTTAAATATGTAAATCTCACAAATATGGGATTGAAAGGTACACTCAAAAGTCTTAACTTCACATCACTTCCAAATATTCTTATTCTTGATCTTAGTTTCAACTTCTTGAATCAAAATATTCCTAACCATATTGGAATATTGTCCAAACTTTCTTATCTTGATCTTAGTCACAATCTTCTCTCTGGAACAATTCCATGTGAAATAACAAATTTGACTAGTCTTCATACTTTATATCTAGATAATAATACTTTCAGTAGTTCCATTCCTAAAGAAATAGGTGCATTGAGGAATCTGAGAAAACTTGGTATCTCAAATGCAAATCTCACAGGGACTCTCCCAACTTCTATTGGGAATTTGACGTTGTTAACGCAATTGTTTCTAGATCGCAACAAACTTTCTGGAGAAATCCCATCTACAATTGGAAATTTACTGAACATGGAATATCTACTTCTTGCTGCAAATAACCTTTGTGAATCTATTCCTCAAGAAATTTGGAAATTATTGAACTTAAAAATCCTATATCTTACTGCCAATAATCTTTCTGGATCTATTCCTCAAGAAATTGGGAAATTATTGAACTTAAAAATCCTACTTCTTAATACCAATAATCTTTCTGGATCTATTCCTAGCGTAATTGGAATGATGAGATCTTTGATTCAAATTGATTTGTCATATAATAGTTTCTCTGGTAAAGTCCCACCTTCAATTGGAAACTTGAGCCATTTACAAGATCTTTCCATTCAAAGAAACCATCTCATTGGGACAATTCCGACGGAATTGAATATGCTTGCTAATCTGGAAACAATCTTTGTAAATGATAACAATTTCATTGGACAGTTGCCTCATAACATTTGCTTTGGTGGAAAATTGGTATCCATTATTGCTTCAAATAACCATTTTACTGGCCAAGTTCTAAAGAATTTGAAGAATTGTTCTAGTCTTATTAGACTATGGCTTGAACATAACCAGTTTTATGGAAACATAACAGAAGATTTTGGTGTATACCCAAATTTGAAGTTCATAAAATTAGATGACAATAATTTTCATGGCCACCTTTCATCCAACTGGGGAAAGTTTTATAACTTGACAGAACTTAACATCTCCAAAAATAATATATCAGGTTGTATACCACCCGAACTCGGTGAAGCACCTAGCCTATATTCAATTGACTTGTCTTCAAACCATCTTACAGGAAATATTCCAAAGGAGTTAGGAAAATTGACTAAGTTGGGCAGACTCTTTTTATCAAACAACCATCTTTCTGGTATTTTTCATGCACAAATAACATCCTTAAGTGGACTTGAAACATTAGATGTTTCATCAAATAATCTATGCGGCTTCATCCCAAAAGAAATTGTCATTTTGCCTAACTTGTTGAACTTAAATTTGAGCCATAACAAATTCAAAGGAAATATTCCTGTTGATTTTGGAAATTTTAAAAACCTTCATTTTCTTGATCTCAGTGGAAACTTTTTGAATGGAACCATTCCACAAATGCTTGGAAAGCTGATATACTTAGAAACATTGAATATTTCACATAACAATCTTTCTGGTTTCATCCCCACTTCCTTGGATCAAATGATTAGTTTGTGGTTGGTTGATATATCATATAACCAGTTGCAAGGTGCACTTCCAAATATGCGAGCATTCAATAACGCTACATTTGAAGTGTTGAGATATAATGCAGGCTTGTGTGGTAATGTTTATGGATTGAAGCCTTGCATAAAACCAACTAGGATCGCTAAGAATAAGAAGGTGTTCTTGTTCATAGTTTTACTCGTAATATCACTAGGAACTCTAATGCTAGCGATCGTTTGTTTCAGATTCTCGTATTGTTTCTTCCATTCGTCAACCACAAGAGAAAACCAGGTTGGAGGAAACGTCATTGCTCCAAGAAGTGTATTTACAATATGGCGTTTTGATGGAAAAATGGTGTATGAGAACATTATTGAAGCCACAGAAGAGTTTGATGACAAACATCTCATTGGAGTAGGAGCGCATGGAAGTGCTTACAAAGCAGAGTTGCAGACAGGTCAAGTTGTTGCTGTCAAAAAACTCCATTCAGTGGTAGATGCAGAAAACCCCAATCTAAAATCATTCACAAATGAGATCCAAGCTCTAACAGAAATTCGGCATCGCAACATTGTGAAGCTATATGGATTTTGTTCACATTCACACTTATCGTTCTTGGTTTACGAGTTCATGGAGAAAGGTAGTTTGGAAAAGATTTTGAAAGATGATGAAGAAGCAATTGCATTTGATTGGACTAAGAGGGTGAATGTTATTAAAGATGTAGCTAATGCTTTATGCTACATGCACCATGAATGCTCCCCTCCGATTGTTCATCGAGATATATCAAGCAAGAATATTCTTCTGGATTTAGAATATGTGGCTCGTGTCTCTGACTTTGGAACAGCTAAGCTTCTTAATCCTAATTCATCCAATTGGACCTCTTTTGCAGGCACCTTTGGATATGTTGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAAAATGATGTGTATAGTTTTGGAGTATTAGCATTGGAAATACTATTTGGAAAACACCCTGGAGATATTGTATCTAATTCTTTACAATGGATTATCATGGGATCAACACTTGATACTATGCCAATGATGAATAAGTTGGATCAACGTCTCTCTCGTCCGGCGAATCGTCGACAGGCTAAGGAGTTAGTATCTATTGCAAAGACAACAATTTCTTGTTTGGCTGATAGGCCACAATCTCGCCCTACCATGGAGCAGGTTTCTAGGGAGCTTTTAAGAATCCCACCTACAATTGGAAATTTACTGAACATAAAAATTCTATTTCTTAATGAAAATAATCTTTATGGATCTATTCCTCAAGAAATTGGAAATTGGGAAGTTATTGAAAATAGAAATATGCTTGCTAATTTGCATTCATTCCAAGTAGATGATAATAATTTAATTGGTGAGTGGCCTCATAACATTTGCCAAGGTGGAAACTTGAACTACATTAGTTCTTCAAATAACAATTTTATAGGGCAAGTTCTAAAGAGTTTGAAGAATTGTTCTAGCCTTATTAGACTTTGGCTTGATCACAACCATTTTGATGGAAACATAACAGATGATTTTGGTGTATACCCAAATTTGGAGTACGTGGAATTGGATGACAATAACTTTTATGGCCACCTTTCATCCAACTGGGGAAAGTTTCATAACTTGACACAACTTCACATCTCCAAAAATAATATATCAGGGTGTATACCACCTGAACTCGGCGAAGCAACTAACCTATATTTAATTGACTTATCTTCAAACCATCTTACAGGAAATATACCAAAGGAGTTAGGAAATTTGACTAAGTTGGGAAGACTCATTTTAAGCACCAACAATCTTTCTGGTAATATTCATGTACAGTTAACAGCATCAAAGGGACTTGAAATCTTAAATGTTGCAGCAAATAATTTAAGTGGTTTCATCACAAAAGAACTTTTCATTTTTCCCAAGTTATTGAACTTAAATTTGAGCCATAACAAATTCAAAGGTAATATTCCTATTGAGTTTGGAAATTTTAAAGTCCTTCAAAGTCTTGATCTTAGTGGAAATTTTTTGGATGGAACCATACCACCAATGCTTGGAAAGCTGAAATACTTGGAAACATTGAATATTTCACATAACAATCTTTCTGGTTTTATTCCCTCTTCCATGGATCAAATGATTAGTTTGTCGTTTGTTGATATATCATATAACCAATTGAAGGGTGCACTTCCAAATATGCGAGTTTTCAATAACGCTACATTTGAAGTGTTGAGAAATAATGCAGGCTTGTGCGGTAATGTTTCTGGCTTGAAGCCTTGCATAAAACCAACCAGTGGATCTCATAATAATAAGACTAAGAAAGTGATCTTGTTCATAGTTTTACCTCTAGCACTAGGAACTCTTATGCTAGCATTCATTTGTTTGAAATTCTCGTATTGTTTCTGCCAATCGGCAACAACAAGAGAAAACCAAGTTGGAGGAAACATCATTGCTCCTACAAATGTATTTACAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAACATTATTGAAGCCACAGAAGAGTTTGATGACAAACATCTCATTGGAGTAGGAGCACATGGAAGTGTTTACAAAGCAGAGTTGCAGACAGGTCAAGTAGTTGCTGTTAAAAAACTCCATTCAGTAGCAGATGCAGAAAACCCCAATCTAAAATCATTCACAAATGAGATCCAAGCTCTAACAGAAATTCGGCATCGCAACATTGTGAAGCTATATGGATTTTGTTCACATTCACAGTTGTCGTTTTTGGTTTACGAGTTCATGGAGAAAGGTAGTTTGGAAAAGATTTTGAAAGATGACGAGGAAGCAATTGCATTTGATTGGAATAAGAGGGTGACTGTTATTAAAGATGTAGCTAATGCTTTATGCTACATGCACCATGATTGCTCCCCTCCGATTGTTCATCGAGATATATCAAACAAGAACATTCTTCTGGATTTAGAATATGTGGCTCGTGTCTCCGACTTTGGAACAGCTAAGCTTCTTAATCCTAATTCATCCAATTGGACCTCTTTTGCAGGCACCTTAGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAAAATGATGTGTATAGTTTTGGAGTATTAGCACTGGAAATACTTTTTGGAAAACACCCTGGAGATATTGTATCTAATTCTTTACAATGGATTATCATGGGATCCACACTTGATAGTATGCCATTGATGAATAAGTTGGATCAACGTCTCTCTCGTCCGGTGAATCATCGACAAGCTAAGCAGTTAATATGCATTGCAAAGACAACATTTTCTTGTTTGGTTGATAGTCCACAATCTCGCCCTACCATGGAGCAGGTTTCTAGGGAGCTTTTAAGTGTGTAG 5184 0.3551 MLVSMECVLCWLFFSMYLCALITSPTSSSSSLTISSTSSSLKSREASALLKWKTSLDNQSQTLLSSWNGNNSCNWLGITCDEDSIYVKYVNLTNMGLKGTLKSLNFTSLPNILILDLSFNFLNQNIPNHIGILSKLSYLDLSHNLLSGTIPCEITNLTSLHTLYLDNNTFSSSIPKEIGALRNLRKLGISNANLTGTLPTSIGNLTLLTQLFLDRNKLSGEIPSTIGNLLNMEYLLLAANNLCESIPQEIWKLLNLKILYLTANNLSGSIPQEIGKLLNLKILLLNTNNLSGSIPSVIGMMRSLIQIDLSYNSFSGKVPPSIGNLSHLQDLSIQRNHLIGTIPTELNMLANLETIFVNDNNFIGQLPHNICFGGKLVSIIASNNHFTGQVLKNLKNCSSLIRLWLEHNQFYGNITEDFGVYPNLKFIKLDDNNFHGHLSSNWGKFYNLTELNISKNNISGCIPPELGEAPSLYSIDLSSNHLTGNIPKELGKLTKLGRLFLSNNHLSGIFHAQITSLSGLETLDVSSNNLCGFIPKEIVILPNLLNLNLSHNKFKGNIPVDFGNFKNLHFLDLSGNFLNGTIPQMLGKLIYLETLNISHNNLSGFIPTSLDQMISLWLVDISYNQLQGALPNMRAFNNATFEVLRYNAGLCGNVYGLKPCIKPTRIAKNKKVFLFIVLLVISLGTLMLAIVCFRFSYCFFHSSTTRENQVGGNVIAPRSVFTIWRFDGKMVYENIIEATEEFDDKHLIGVGAHGSAYKAELQTGQVVAVKKLHSVVDAENPNLKSFTNEIQALTEIRHRNIVKLYGFCSHSHLSFLVYEFMEKGSLEKILKDDEEAIAFDWTKRVNVIKDVANALCYMHHECSPPIVHRDISSKNILLDLEYVARVSDFGTAKLLNPNSSNWTSFAGTFGYVAPELAYTMEVNEKNDVYSFGVLALEILFGKHPGDIVSNSLQWIIMGSTLDTMPMMNKLDQRLSRPANRRQAKELVSIAKTTISCLADRPQSRPTMEQVSRELLRIPPTIGNLLNIKILFLNENNLYGSIPQEIGNWEVIENRNMLANLHSFQVDDNNLIGEWPHNICQGGNLNYISSSNNNFIGQVLKSLKNCSSLIRLWLDHNHFDGNITDDFGVYPNLEYVELDDNNFYGHLSSNWGKFHNLTQLHISKNNISGCIPPELGEATNLYLIDLSSNHLTGNIPKELGNLTKLGRLILSTNNLSGNIHVQLTASKGLEILNVAANNLSGFITKELFIFPKLLNLNLSHNKFKGNIPIEFGNFKVLQSLDLSGNFLDGTIPPMLGKLKYLETLNISHNNLSGFIPSSMDQMISLSFVDISYNQLKGALPNMRVFNNATFEVLRNNAGLCGNVSGLKPCIKPTSGSHNNKTKKVILFIVLPLALGTLMLAFICLKFSYCFCQSATTRENQVGGNIIAPTNVFTIWSFDGKMVYENIIEATEEFDDKHLIGVGAHGSVYKAELQTGQVVAVKKLHSVADAENPNLKSFTNEIQALTEIRHRNIVKLYGFCSHSQLSFLVYEFMEKGSLEKILKDDEEAIAFDWNKRVTVIKDVANALCYMHHDCSPPIVHRDISNKNILLDLEYVARVSDFGTAKLLNPNSSNWTSFAGTLGYAAPELAYTMEVNEKNDVYSFGVLALEILFGKHPGDIVSNSLQWIIMGSTLDSMPLMNKLDQRLSRPVNHRQAKQLICIAKTTFSCLVDSPQSRPTMEQVSRELLSV* 1728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2545 1727 ProSiteProfiles Protein kinase domain profile. 742 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2545 1727 ProSitePatterns Protein kinases ATP-binding region signature. 1458 1481 IPR017441 GO:0005524
Tpr6g2545 1727 Gene3D Ribonuclease Inhibitor 249 349 IPR032675 -
Tpr6g2545 1727 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1016 1725 - -
Tpr6g2545 1727 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 223 1014 - -
Tpr6g2545 1727 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 163 242 - -
Tpr6g2545 1727 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 10 185 - -
Tpr6g2545 1727 SUPERFAMILY L domain-like 1102 1360 - -
Tpr6g2545 1727 Gene3D Ribonuclease Inhibitor 350 666 IPR032675 -
Tpr6g2545 1727 SUPERFAMILY L domain-like 1017 1120 - -
Tpr6g2545 1727 SUPERFAMILY RNI-like 90 435 - -
Tpr6g2545 1727 Pfam Leucine rich repeat N-terminal domain 44 81 IPR013210 -
Tpr6g2545 1727 Gene3D Ribonuclease Inhibitor 1019 1370 IPR032675 -
Tpr6g2545 1727 Pfam Protein kinase domain 1453 1721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2545 1727 Pfam Protein kinase domain 743 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2545 1727 Gene3D Ribonuclease Inhibitor 192 248 IPR032675 -
Tpr6g2545 1727 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1576 1588 IPR008266 GO:0004672|GO:0006468
Tpr6g2545 1727 ProSiteProfiles Protein kinase domain profile. 1452 1725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2545 1727 Gene3D Ribonuclease Inhibitor 42 191 IPR032675 -
Tpr6g2545 1727 SUPERFAMILY L domain-like 394 652 - -
Tpr6g2545 1727 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1016 1725 - -
Tpr6g2545 1727 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 163 242 - -
Tpr6g2545 1727 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 10 185 - -
Tpr6g2545 1727 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 223 1014 - -
Tpr6g2545 1727 Pfam Leucine rich repeat 495 554 IPR001611 GO:0005515
Tpr6g2545 1727 Pfam Leucine rich repeat 567 626 IPR001611 GO:0005515
Tpr6g2545 1727 Pfam Leucine rich repeat 1276 1334 IPR001611 GO:0005515
Tpr6g2545 1727 SUPERFAMILY Protein kinase-like (PK-like) 720 1014 IPR011009 -
Tpr6g2545 1727 SMART LRR_typ_2 493 512 IPR003591 -
Tpr6g2545 1727 SMART LRR_typ_2 1024 1048 IPR003591 -
Tpr6g2545 1727 SMART LRR_typ_2 301 325 IPR003591 -
Tpr6g2545 1727 SMART LRR_typ_2 349 373 IPR003591 -
Tpr6g2545 1727 SMART LRR_typ_2 541 564 IPR003591 -
Tpr6g2545 1727 SMART LRR_typ_2 1201 1225 IPR003591 -
Tpr6g2545 1727 SMART LRR_typ_2 565 589 IPR003591 -
Tpr6g2545 1727 SMART LRR_typ_2 1057 1081 IPR003591 -
Tpr6g2545 1727 SMART LRR_typ_2 1273 1297 IPR003591 -
Tpr6g2545 1727 SMART LRR_typ_2 445 469 IPR003591 -
Tpr6g2545 1727 SMART LRR_typ_2 157 181 IPR003591 -
Tpr6g2545 1727 SMART LRR_typ_2 253 277 IPR003591 -
Tpr6g2545 1727 SMART LRR_typ_2 205 229 IPR003591 -
Tpr6g2545 1727 SMART LRR_typ_2 109 133 IPR003591 -
Tpr6g2545 1727 SMART LRR_typ_2 1153 1177 IPR003591 -
Tpr6g2545 1727 ProSitePatterns Tyrosine protein kinases specific active-site signature. 866 878 IPR008266 GO:0004672|GO:0006468
Tpr6g2545 1727 SUPERFAMILY Protein kinase-like (PK-like) 1432 1724 IPR011009 -
Tpr6g2545 1727 Gene3D Transferase(Phosphotransferase) domain 1 1531 1727 - -
Tpr6g2545 1727 Gene3D Transferase(Phosphotransferase) domain 1 821 1018 - -
Tpr6g2545 1727 Gene3D Phosphorylase Kinase; domain 1 713 820 - -
Tpr6g2545 1727 Gene3D Phosphorylase Kinase; domain 1 1423 1530 - -
Tpr6g2545 1727 ProSitePatterns Protein kinases ATP-binding region signature. 748 771 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2545 Tpr-Chr6 27780374 27792808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2545 29 914 Receptor kinase-like Gene Family AT4G08850 45.189 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr6g2545 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2545 - - vun:114189705 1359.74