Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2540 ATGGCTTTGAATCTCAACGACTCAAGCATTCAATACAATAAGAAGAAACACCTTGGAGAGCAATTTAATTATATCCCACATGATGTACTACAAAATTTGGAATGGTGCCCTACTTTTTCAGAAACCATGGAGAGAAGTTTGCAAAAAGATTGGAATTATTTGCTTTTTTGTGACACTCATGAGAAAGAAAATATCAAATTCAATCAATTGGGTGAAGGAATAACACAAAAGAATGTGTCAAATATTCAAATAAATCAAGAGATAAATATTGATACAAGTTTGCCTAATATTCATAGCATCAATCATGAGTATCTACCAAAGAAAAATAAGAAGTCTTGTTCTACTACGAAAGGTAAAGATAAGAGTCTCAAAGCAAAGTGCATAGAAAAAAATAATGAGAAGTTTTGTGCTATTAAGAAGAGTAAAGATAAGAGTCTCAAAGTAAAGGGTATAGATAAATATAGTGAGAGAATGTGTAGCCATTGTGAGACTAAAGACACTACTCAATGGAGGGTTGGTCCTTTGGGGAGAAATACTTTATGCAATGCTTGTGGATTGAGATACAAGTCACATCGATTGATGGAAGGGTATAAACCTAAGGCAAGTTCAAATTCTGATGTTGCAAACCATTCAAATTTTCACAAGACCTTGTGA 654 0.3318 MALNLNDSSIQYNKKKHLGEQFNYIPHDVLQNLEWCPTFSETMERSLQKDWNYLLFCDTHEKENIKFNQLGEGITQKNVSNIQINQEINIDTSLPNIHSINHEYLPKKNKKSCSTTKGKDKSLKAKCIEKNNEKFCAIKKSKDKSLKVKGIDKYSERMCSHCETKDTTQWRVGPLGRNTLCNACGLRYKSHRLMEGYKPKASSNSDVANHSNFHKTL* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2540 217 Gene3D - 149 212 IPR013088 GO:0006355|GO:0008270
Tpr6g2540 217 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 6 217 - -
Tpr6g2540 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 202 - -
Tpr6g2540 217 CDD ZnF_GATA 159 209 IPR000679 GO:0006355|GO:0043565
Tpr6g2540 217 SMART GATA_3 153 203 IPR000679 GO:0006355|GO:0043565
Tpr6g2540 217 PANTHER GATA TRANSCRIPTION FACTOR 6 217 - -
Tpr6g2540 217 ProSiteProfiles GATA-type zinc finger domain profile. 153 191 IPR000679 GO:0006355|GO:0043565
Tpr6g2540 217 Pfam GATA zinc finger 159 194 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2540 Tpr-Chr6 27757064 27757717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2540 24 215 C2C2-Gata Transcription Factor Family AT4G32890 34.694 1.58e-20 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr6g2540 GATA 1.3e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2540 - - mtr:MTR_7g446110 211.846