Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2537 ATGGTTGGCGTTTCAAGCCGGACTCGTAGCAAAAATGTTCCTTTGTTTTCTAGTTTTTCGCTTGACTGTTCATCTTCTAAGCGGAAAAAGAGTGATGAAGATGATATGGGTTTTGAATCTGTTTCTGGGTCTAAGAGAAGAAGGGTAAAAAATGAAACTTTGGTGATTCCTCAGAATGATGATGAGGTTATTTTTATTGAGGATGATGATTATGATGAAGGGTCGGAGCATTGTGATGAGAAGATGTTTGAGGGTGATGTTGATGTTAAAATGGAAGCGAAAAGTGATGAGATTGAAGGAAGTTGTGAGATTGGTGATAAAAATGGAAGCTTTGATGATGAAAAGTGTGGTTGGGATCGCGAAAATCCGATTACAATAGATTCAGAAGATGAACAGTTTGTTGATTCTGAGGCTGAGGATGAAGGAGGTGATGTTAGAAAGGAAGTAGAAGTTGATGGAAGTGGAGGAAGATGTGAGATTGATGATAAAGATGGAAACTTTGATGATGAAAAATGTGGTTGGGAAAAGGAAAATCCGATTACATTTGACGAAGAGGATGAACAGTTTGTTGGTTCTGAGGCTGATGATGAAAGAGATGATGTTAGAAAGGAGGTGAAAGTTGATGGAAGTGGAGGAAGTGGTGAGTTTGTTGATAAAAATGAAAATTTTGTTGATTCTGATGAGAGTGATGAAGATGATGATTCTGATGAAAGTGAGGAAAATGATACTAGTGATGAGGATTTTAGAGTTGATGAGGTGAATGAGATTATTGACGATGATGATGACAGTTCTTCTGAATCTTCTTTTGCTGATGATAGTGGGGAGGAGGAGGAAGAGAAGAAGAAAAAGGGTTCTGGAAAATCCTTCAATGTGGTAGAGGAGCTGATTAGAGAGGTGAATGATGAAAAAAGTGGGGAGGAGGAGGAGGAGGAGGAGAAGGAGAAGAAGAAGGTGAATGATATTTTTGTTAGTGATGATGGAAATTCAAATGATGTTGATAATGATGAGGAGGAGATTAGGGAAGAGGAGAAGGAGAATGAGATTTCTGATAGTGATGGAAGTTCAAACGATGTTATTGTTGATGATGATGAGGAGGAGGAGTTTAGGGAGGAGGAGAAGAAGGGTTTGAGTGAACCAAACAATGTGGTGGAGGAGGACAAAGAGGAGAATTTGGATCCGTTGTGGCAAAAATGTGACAAATATTTGATGGAGGAGGAGGAGCGGTTGAAAGAGGTGAAGGATAAAAAAATTGGAATTTGTAAGAGGAATAATCAGAAGAAAAAGATTAAGATTAGGGATGAGGAGAAGAAGGGTTTGAGAAAACCAAACAATGTGGTGGAGGAGGACAGAGAGGAGATTATGGAGGAGAAGAAGGATTCGGATAAACAGAAAATGGCGGAGAACAAACTAAGAAAAGATTATAAAGGCAGATTTAACATCCAAAATGGCGATAAGAAAGAATCCAAGGATAACAATGGTTTGAATCGAAGGGGCAAAAGTGCGTATTTTACGTCGAAGGATTTGAGTTTAGTCAAACTCCTTGCTGAATGCTATTCTGACAAGCAAAATACCATGAAGAATGATCCAATTCTGTTGGATAATGATGATGGTGATGATGTTAATCCGCAAGAGACACGGACACCGCCGGTTTGTGTTGAGACACCTCTGATATGGAGCCTAAAGAAGGTTCAAAAGGTGGAATTGACTGAAGAGGAGGAGGAGGAACGTAGGAAGAATGAAGAGTTAAAGCCCATTTGGGATGAATTTGAAACAGCCGAAAGAGAAATGGAAGCTGAATCCAAGATTGGAAATTTAGGTACAAATGAAGCTACACGGGAAAATAACGGAAGTCCTTCATCTCGCTGTGAGCATGATATTGTTTATGACGAAGCGATTGGTGATTATTGCAAATCGTGTGGTAAAGTTATTACTGAGAGCAAATATAAGACACAACTAGTGGAGGATAGATATCCGAATGAAGGTTCAAGAAGAAGGGCGTCAATTGGTGGAGACGATGTGTCACTCTTTGATCGGTCTCACTTGAATGTTTCTGATGATGACTCGAAGGATAATGTTTCACATACTGAAGTCAGAGTTTGGGACAAAATTCCTGGTGTGGAACAAACCTTATACCCTCACCAACAAGAAGGTTTTGAGTTCATATGGAAAAACTTGGCTGGAAGTATTGAGCTTCAAAAGTTAAAGAATGCCGATCCTCGCAGTGAAGGTGGCTGTATTATTTCTCATGCTCCTGGAACCGGAAAGACAAGGCTGACAATAGTTTTCCTCAAGGCATATTTGAAGTTGTTTCCAAAATGCTTGCCGATTGTTGTCGCTCCTGCTAGTTTACTACTGACTTGGGAAGAGGAATTCAAGAAATGGGACATTGGAGTTCCATTTCACAATTTAGGCAATTTAGAGCTATCTGGTAAAGAGCATGCCGATGCGGTTAACAAATTCGATAGCTTTAGTACACGGCATCATGCTGATGAAACACGAATGGCGAAACTGATTTCGTGGTTCAAAGAAACAAGCATTCTTGGAATGAGCTACAATTTGTATGGATCAATTTGCCAACATAAGAAAGAGGAAAAGCTTAAAAGTTTGAAGGAGACAAAAGGAAACTTTGATATGCGAGATGTTCTACTTAAAGCTCCTGGTTTGTTGGTTCTTGATGAAGGACACACACCAAGAAATCAAAGAAGTCATATTTGGAAGGTGTTGAAGAAGAGTCAAACACCGAAGCGAATTATCCTTTCCGGAACTCCATTCCAAAATAATTTCTCGGAGCTTTACGGCACTTTGAGCTTAGTCAAGCCTTCTTTTCCTACCATGATACCGCCTGAGCTAAAAACGTTTTGTAATAAGCAGGTACAAAAATCATCTAAAAAATGGGGTTGGGAAGCTTATTCAGGCAACATAGAAAGAGACCCTTCTGATGATGATAAGATCAAGAAGTTGAAATTGCTAATGGATCCCTTTGTTCATGTTCACAAAGGTGCGATCCTTAAAAGTAAGCTTCCCGGGTTAAGGGAATGTTTGGTGACTTTGAAGGCAGATAGTTTGCAGAATGATATTCTGAAGAGTATTAAACGTTCTCATAACACAGTATTTAACTTTGAGCGTAAGATTGCATTGGCATCTGTCCATCCATCTCTTTTCCTTAAATGTCATCTTTCGAAAGAAGAAGATTCTTTACTCGACAAGGATAAGATAAAACAGCTTAGAATGAACCCACATGAAGGTGTCAAAACAAAATTTGTGTACGAGTTTGTTCGGCTGTGTGATGCTTCCAACGAGAAAGTCCTTATTTTCAGCCAATTCCATGCTCCTTTACAATTAATTCAAGACCAATTAAACTCGGCTTTTAACTGGTCTAACGGAGAAGTGCTGTTCATGTCTAGCAATGATTCTACAAAGGATAAGCAGTCCATAATCCATAGCTTCAATGATGAAAATAGCAAAGCGAAGGTTCTACTTGCAGCTACAAAAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTTGTGCTTCTTGATGTTGTATGGAATCCTTCGGTTGAAAGACAGGCTATCAGCCGAGCATATAGGATTGGACAAAAGAAGGTGGTATACACATACCATCTTCTCGCTGAAGGGACTAGTGAGGCAGAAAAATATGGCAAACAGGCCGAAAAGGATCGGTTATCTGAGCTCCTTTTTTCAGCTAAAAATGCCACCGATAATGATGTGTCCAAGCGCCGTGCTGTGAACTTTGAAGATGAAGTTCTTGATAAGATGACTCGACATAAAAAGCTCATAGACATGTTCGTTAAGTGCGTCGTACTGAGGAAGGAGCAAGATTTGGTCTGA 3858 0.3971 MVGVSSRTRSKNVPLFSSFSLDCSSSKRKKSDEDDMGFESVSGSKRRRVKNETLVIPQNDDEVIFIEDDDYDEGSEHCDEKMFEGDVDVKMEAKSDEIEGSCEIGDKNGSFDDEKCGWDRENPITIDSEDEQFVDSEAEDEGGDVRKEVEVDGSGGRCEIDDKDGNFDDEKCGWEKENPITFDEEDEQFVGSEADDERDDVRKEVKVDGSGGSGEFVDKNENFVDSDESDEDDDSDESEENDTSDEDFRVDEVNEIIDDDDDSSSESSFADDSGEEEEEKKKKGSGKSFNVVEELIREVNDEKSGEEEEEEEKEKKKVNDIFVSDDGNSNDVDNDEEEIREEEKENEISDSDGSSNDVIVDDDEEEEFREEEKKGLSEPNNVVEEDKEENLDPLWQKCDKYLMEEEERLKEVKDKKIGICKRNNQKKKIKIRDEEKKGLRKPNNVVEEDREEIMEEKKDSDKQKMAENKLRKDYKGRFNIQNGDKKESKDNNGLNRRGKSAYFTSKDLSLVKLLAECYSDKQNTMKNDPILLDNDDGDDVNPQETRTPPVCVETPLIWSLKKVQKVELTEEEEEERRKNEELKPIWDEFETAEREMEAESKIGNLGTNEATRENNGSPSSRCEHDIVYDEAIGDYCKSCGKVITESKYKTQLVEDRYPNEGSRRRASIGGDDVSLFDRSHLNVSDDDSKDNVSHTEVRVWDKIPGVEQTLYPHQQEGFEFIWKNLAGSIELQKLKNADPRSEGGCIISHAPGTGKTRLTIVFLKAYLKLFPKCLPIVVAPASLLLTWEEEFKKWDIGVPFHNLGNLELSGKEHADAVNKFDSFSTRHHADETRMAKLISWFKETSILGMSYNLYGSICQHKKEEKLKSLKETKGNFDMRDVLLKAPGLLVLDEGHTPRNQRSHIWKVLKKSQTPKRIILSGTPFQNNFSELYGTLSLVKPSFPTMIPPELKTFCNKQVQKSSKKWGWEAYSGNIERDPSDDDKIKKLKLLMDPFVHVHKGAILKSKLPGLRECLVTLKADSLQNDILKSIKRSHNTVFNFERKIALASVHPSLFLKCHLSKEEDSLLDKDKIKQLRMNPHEGVKTKFVYEFVRLCDASNEKVLIFSQFHAPLQLIQDQLNSAFNWSNGEVLFMSSNDSTKDKQSIIHSFNDENSKAKVLLAATKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKKVVYTYHLLAEGTSEAEKYGKQAEKDRLSELLFSAKNATDNDVSKRRAVNFEDEVLDKMTRHKKLIDMFVKCVVLRKEQDLV* 1286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2537 1285 MobiDBLite consensus disorder prediction 329 345 - -
Tpr6g2537 1285 MobiDBLite consensus disorder prediction 431 499 - -
Tpr6g2537 1285 Coils Coil 289 316 - -
Tpr6g2537 1285 MobiDBLite consensus disorder prediction 274 302 - -
Tpr6g2537 1285 MobiDBLite consensus disorder prediction 25 47 - -
Tpr6g2537 1285 Coils Coil 561 583 - -
Tpr6g2537 1285 CDD SF2_C_SNF 1084 1212 - -
Tpr6g2537 1285 SMART ultradead3 706 953 IPR014001 -
Tpr6g2537 1285 Coils Coil 332 352 - -
Tpr6g2537 1285 Pfam SNF2-related domain 720 1033 IPR000330 GO:0005524|GO:0140658
Tpr6g2537 1285 Gene3D - 1008 1277 IPR027417 -
Tpr6g2537 1285 Coils Coil 443 463 - -
Tpr6g2537 1285 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1087 1247 IPR001650 -
Tpr6g2537 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 702 993 IPR027417 -
Tpr6g2537 1285 MobiDBLite consensus disorder prediction 139 179 - -
Tpr6g2537 1285 MobiDBLite consensus disorder prediction 180 194 - -
Tpr6g2537 1285 MobiDBLite consensus disorder prediction 125 393 - -
Tpr6g2537 1285 Pfam Helicase conserved C-terminal domain 1094 1201 IPR001650 -
Tpr6g2537 1285 MobiDBLite consensus disorder prediction 195 209 - -
Tpr6g2537 1285 MobiDBLite consensus disorder prediction 22 47 - -
Tpr6g2537 1285 MobiDBLite consensus disorder prediction 224 273 - -
Tpr6g2537 1285 SMART helicmild6 1113 1201 IPR001650 -
Tpr6g2537 1285 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 261 1284 IPR044567 GO:0080188
Tpr6g2537 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 886 1250 IPR027417 -
Tpr6g2537 1285 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 736 941 IPR014001 -
Tpr6g2537 1285 MobiDBLite consensus disorder prediction 370 393 - -
Tpr6g2537 1285 Gene3D - 676 973 IPR038718 -
Tpr6g2537 1285 MobiDBLite consensus disorder prediction 431 494 - -
Tpr6g2537 1285 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 261 1284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2537 Tpr-Chr6 27709524 27714770 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2537 1099 1258 RAD5 or RAD16-like Gene Family AT5G05130 36.025 1.45e-16 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr6g2537 SNF2_N 1.8e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2537 K10875 - gmx:100812737 777.704