Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2536 ATGGCTGGTGGTGTTTCAAGCAGAACACGTAGCAAGAAGGTTCCATTGTTTCATAGTCCTTTGTTTGATTCTTCATCTTCAAAGAGAAGAAAGAATGAAGAAGATGCTACGAGTTTAGATTCTGCTTCTGGGTCTAAAAGAAGAAGGTTAAAAGATGAAGCTTTTTTGATTCCTGAGAATGCTGAGATTATTTCTATTGATGATGAAGATGAAGAAGAGTTTAAGAAGGAAGTGAAGATTGATGAGAGTGGAGGAAGTAGTGAGATTGGTGATAATAAAGATGGAAACTTTGTTGATGAAAAGATTGGTTGGGATAGGGAAAACCCGATTATATTCTTAGATGAATCTGGTGAGAGTGATGATGAAGAAGAAGAAGAAGATAGTGTTAAAGAGGGAGTAAAAAGTTATGAAAGTGGTGAGTGTGCTGATAAAAATTTGATTGTTTTGGATGACACTGATGAGAGTGTTAATGAAGATGATGATTCTGATGAGAGTGATGATGATGATGAAGATGATGATGATGATGAGAGTGAAGAAAACGAGACGAGTGATGAGGATTTTAACGTTGATGAACTGGATGAGGTTTCTGATGATGATGATGATGATGATAGTTATGATGATGAAGGGAAGAAGAAAAAGAGAACGAGAAAAGATTTTGATGTGGTGGAGGAGCTGGAGAGAGATGTGATGGATAAACAAAGTGGAGTTTCTGTAAACAATGATGAAGAGAAGAAGAAAAAGAGAATGAGAACAGATTTTGATGTGGTGGAGGAGCTGGTGAGAGAGGTAAATGATAGACAAAGTGGAATTTGTCAGATGAAAAACGAGAAGAAGGGTTCTATAAACAATGATGAAATCGAGCATTCGGATTATGGTAGTGTAACAAATTCTACTACCTTTGAGAAGAAGGGTTCTTTGGATCCAATCAAGGGTTGTTCTTCTTCTTCTTCAAACAAGAAAGAAGAATCAATGAAACAGAAAGCAAAAAGTGTGGAAAAAAATGTCTCTGAGGTGTCTGATTTTGATGGAGAAAAACAGCAATATGGCAAGAGAAGAGGGAATAATTCAGAGAAACAAAAAAAGATGGAGAACAATGGTTTGAATCGAAGGGGTAAAAGTGCGTATTTTTCGTTGAAGGATTTGAGTTTAGTCAAACTCCTTGCTGAATGCTATTCATACAAGGAAAATAGCATTAAGAATGATCCAATTCTGCCGGAGGTGAATAGTGATAATGATTATGATGATGATGATGATGTTAATCCGCGAGATACACGGAAACCACCAGTTTGTGTTGAGGCACCTTTGATATGGAGCCTAAAAAAGGTTCAAACAGTAGAACTGACTGAAGAGGAGGAGGAGGAACGGAGGAAAAATGAAAAGTTAGAGCCCATATGGGATCAAATGGCTATGTACATTAATGAATCAGAAGCTGAATCCAAGATAGGAAATTTAGTGACAAATGAAGCCTCACAAGGAAATAACGGAAGTCCTTCATCTCGCTGTGAGCATGACATTATCTACGATGAAGTGATTGGTGATTATTGCAAATCGTGTGGTCATGTTATTACTGAGAGCAAATATAAGACACAACTAGTGAGGGATAAATATCCATATGAAGGGTACGAAAAAAGAGCTTCATCGGAGGATTCTGAAAATTCCTTACACTTGGATTGCTCTCAGTCTCGCGTCAATGTTTCCGATGGTGATTTAGATGCTAATATCTGTCATAAAAAAGGCACAGTTTGGGACCTAATTCCTGAAGTGAGAGAAACTTTGTATCCTCATCAACAGGAAGGCTTTGAAGTCATTTGGAAAAACTTGGCAGGAAGCATCAGTCTTAAAAAGTTGAAGAACACGGATCCTGACAAAGAGGGTGGCTGCATTATTTCACATGCTCCTGGAACTGGAAAAACAAGGTTGACAATAGTCTTTCTCATGGCATATTTGAAAGTGTTTCCTGAATGCTTTCCGGTTATCATTGCTCCTGCGGGTTTGTTACTTACTTGGGAAGATGAGTTCAAAAAATGGAACATTGGAGTTCCATTTCACAATTTGAATAATCCTGAGTTATCCGGTAAAGAGCACGATGATGCTGTTAATGCGTTTAATTGGTCTACTGCACAGCATAGTAAGGTCGATACGCGAATGGTGAAACTGATTTCGTGGTACAAAGAAACAAGCATTCTTGGAATCAGTTACACTTTGTACAAGAAACTAGCTGGTGCAGTGGAATCTGAAGACGAGGGAGAAATGGGGAAATTTCTGCGAAAAGTTCCTGGCTTGTTGGTGCTAGATGAAGGACACACGCCGAGAAATAAAAGAAGTGGTATTTGGAAGGTGTTTTCGGAAATTCCAACAAAGAAGCGAATTATACTTTCCGGAACTCCTTTTCAGAACAACTGCTTGGAGCTATATAACACTTTGAGCCTTGTGAAGCCTTCGTTTCCAAACATGTTACCGCTCGAGCTGAAAAAGTTTTGCCAGAAGCAGCAAAAAAAAAAGGCATCGAAAGAATTGAGGTGGGAACAGTTGAAGTTGCTTATGGATCCCTTAGTGCATGTCCACAAAGGTGCGATCCTTCAAAAGAAGCTTCCCGGGTTAAGAAATTGCGTGCTGCGTTTGAAGCCTGACGGATTTCATAAGCAAATTCTTGAGAGTTTTGAAAGTTCTCAGAACTCATTGATATTTGAGAATAATCAAACATTGGTGTCCATCCATCCGTCTCTTTTCCTCGAGTGCACACTTTCGGAACAAGAAAAATCTGCTGTCGACAAGGACCGGCTAGAGAAGCTTAGATTGAATCATAACGCAGGCGTCAAAACAAGGTTTTTGGTGGAATTCGTTAGTCTTTGTGCTGCTGTTAATGAAAAGGTTCTCGTGTTCAGCCAATTCCTCCGTCCATTACACTTAATCATAGGCCATTTAAAGTCGGCTTTAAAATGGACCGAGGATGAGGAAATTTTGTACATGGATGGACGGGTTAAGGACAGGCAATCCTTAATCCATCGATTCAATGATGCAGACAGCCAAGCGAAGATTCTCCTTGCATCAACAAAAGCTTGTTCGGAGGGAATCAGCTTGGTCGGAGCTTCAAGGGTTGTGCTACTGGATGTCGAATGGAATCCGTCGGTAGAAAAACAGGCTATAAGCCGAGCTTATAGAATAGGACAGACGAAGTTTGTGTACATATATCATCTGCTCACGCAAGGGACTAGAGAGTGCGATAAATATTGCAAGCAGATTGAAAAGCACCGGTTGTCTGAACTTATTTTCTCGGCTAAAAATGCTTACAACAATGACGAGTCAAAAAGCCGTGCAACGAACGTTGAAGATACGATTCTTGATAAGATGATTAGGCACGAAAATCTCAAAGACCTGTTTGATGACTGTGTGATACAGGTCGAAGGAGCTAGAATTTGA 3420 0.3953 MAGGVSSRTRSKKVPLFHSPLFDSSSSKRRKNEEDATSLDSASGSKRRRLKDEAFLIPENAEIISIDDEDEEEFKKEVKIDESGGSSEIGDNKDGNFVDEKIGWDRENPIIFLDESGESDDEEEEEDSVKEGVKSYESGECADKNLIVLDDTDESVNEDDDSDESDDDDEDDDDDESEENETSDEDFNVDELDEVSDDDDDDDSYDDEGKKKKRTRKDFDVVEELERDVMDKQSGVSVNNDEEKKKKRMRTDFDVVEELVREVNDRQSGICQMKNEKKGSINNDEIEHSDYGSVTNSTTFEKKGSLDPIKGCSSSSSNKKEESMKQKAKSVEKNVSEVSDFDGEKQQYGKRRGNNSEKQKKMENNGLNRRGKSAYFSLKDLSLVKLLAECYSYKENSIKNDPILPEVNSDNDYDDDDDVNPRDTRKPPVCVEAPLIWSLKKVQTVELTEEEEEERRKNEKLEPIWDQMAMYINESEAESKIGNLVTNEASQGNNGSPSSRCEHDIIYDEVIGDYCKSCGHVITESKYKTQLVRDKYPYEGYEKRASSEDSENSLHLDCSQSRVNVSDGDLDANICHKKGTVWDLIPEVRETLYPHQQEGFEVIWKNLAGSISLKKLKNTDPDKEGGCIISHAPGTGKTRLTIVFLMAYLKVFPECFPVIIAPAGLLLTWEDEFKKWNIGVPFHNLNNPELSGKEHDDAVNAFNWSTAQHSKVDTRMVKLISWYKETSILGISYTLYKKLAGAVESEDEGEMGKFLRKVPGLLVLDEGHTPRNKRSGIWKVFSEIPTKKRIILSGTPFQNNCLELYNTLSLVKPSFPNMLPLELKKFCQKQQKKKASKELRWEQLKLLMDPLVHVHKGAILQKKLPGLRNCVLRLKPDGFHKQILESFESSQNSLIFENNQTLVSIHPSLFLECTLSEQEKSAVDKDRLEKLRLNHNAGVKTRFLVEFVSLCAAVNEKVLVFSQFLRPLHLIIGHLKSALKWTEDEEILYMDGRVKDRQSLIHRFNDADSQAKILLASTKACSEGISLVGASRVVLLDVEWNPSVEKQAISRAYRIGQTKFVYIYHLLTQGTRECDKYCKQIEKHRLSELIFSAKNAYNNDESKSRATNVEDTILDKMIRHENLKDLFDDCVIQVEGARI* 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2536 1139 MobiDBLite consensus disorder prediction 152 205 - -
Tpr6g2536 1139 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 618 814 IPR014001 -
Tpr6g2536 1139 MobiDBLite consensus disorder prediction 129 151 - -
Tpr6g2536 1139 SMART ultradead3 588 824 IPR014001 -
Tpr6g2536 1139 Coils Coil 442 462 - -
Tpr6g2536 1139 SMART helicmild6 969 1056 IPR001650 -
Tpr6g2536 1139 MobiDBLite consensus disorder prediction 320 367 - -
Tpr6g2536 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 760 1104 IPR027417 -
Tpr6g2536 1139 MobiDBLite consensus disorder prediction 1 51 - -
Tpr6g2536 1139 MobiDBLite consensus disorder prediction 24 51 - -
Tpr6g2536 1139 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 1133 IPR044567 GO:0080188
Tpr6g2536 1139 MobiDBLite consensus disorder prediction 114 128 - -
Tpr6g2536 1139 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 2 1133 - -
Tpr6g2536 1139 MobiDBLite consensus disorder prediction 403 422 - -
Tpr6g2536 1139 CDD SF2_C_SNF 940 1067 - -
Tpr6g2536 1139 Gene3D - 869 1131 IPR027417 -
Tpr6g2536 1139 MobiDBLite consensus disorder prediction 286 319 - -
Tpr6g2536 1139 MobiDBLite consensus disorder prediction 63 249 - -
Tpr6g2536 1139 Pfam SNF2-related domain 601 900 IPR000330 GO:0005524|GO:0140658
Tpr6g2536 1139 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 946 1102 IPR001650 -
Tpr6g2536 1139 MobiDBLite consensus disorder prediction 206 249 - -
Tpr6g2536 1139 MobiDBLite consensus disorder prediction 72 113 - -
Tpr6g2536 1139 Gene3D - 568 857 IPR038718 -
Tpr6g2536 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 583 839 IPR027417 -
Tpr6g2536 1139 Pfam Helicase conserved C-terminal domain 951 1056 IPR001650 -
Tpr6g2536 1139 MobiDBLite consensus disorder prediction 265 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2536 Tpr-Chr6 27701041 27705357 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2536 955 1113 RAD5 or RAD16-like Gene Family AT5G05130 38.272 1.12e-15 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr6g2536 SNF2_N 8.1e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2536 K10875 - gmx:100812737 758.444