Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2535 ATGACGGCTAGTGTTTCTAGCGGAACTCGTAGCAAGAATGTTTCATTGTTCGGTTGTCTTTCACTTGGTGGTTCATCAAAGTCAAGAAAGAATGTTAAAAATGACATGGGTTTGGACTCTGTTTCAGCTGGGTCTAAAAGAATGAGGTTCAAAGAAAAACCTTTTGTGACTATGGATGGTGTTTCTAGCAGAACTCGTAGCAAAAATGTTCGGTTGTTTGATTGTCTTTCACTTGATAGTTCATCAAAACTGAGAAAGAATGTTGAAGCTGATAAGGGTTTGGACTCTGTTTCAGTTTCTGGGTCTAAAAGAATGAGGGTAAAAGAAGCGCCTTTTGGGATGATAGATTGTGTTTCTAGCAGAACTCGTAGCAAAAATGTTCCGTTGTTCGGTTGTCTTTCACCTGATGGTTCATCTTTAAAGCGGAGAAAGATTGATGAAGATGATATGGGTTTGGAATCTGTTTCTGGGTCTAAAGAAAGGAAGGTAAATGAAGATGTTGAAGGGTTGGAGCAATGTGATGAGAAGAAGTATGAGGGTGATGGTGAAAAGGAAGTGAAAAGTGATGAAAATGGTGAGATTGATGCTAAAGATGAAAACTTTAATGAGGAAAAGTGTGATTTGGAACATGAAAATCCAATTACAGTAAGTGTGGGTGGTGTTTCTAGCCGAACTCGTAGTAAAAGTGTTCCATTGTTTGGTTGTCTTTCACTTGATGTTTTATCTTCAAAGAGGAGAAAGAGTGATGAAGATGGAATTGTTTTGGGATCTGTTTGTGGGTCTAGAAAAATGAGGGTAAGGGGAGAAGTGTTGGTGGTTCCTGAGAATGATAAGGTTATTTCCATCCATGATGATGATGTTGATGATGAAGAAGGGTTGGAGCAATGTGGAGAGAAGATGTTTGAGGATGGTGTTGATGTTATAAAGGAAGTGAAAAGTGATGAAAGTGGAGGAAATGGTGAGATTGCTGGTAAAGATGAAAACTTTGTTGATGAAAATTACTCAGATGAATCTGATGAAAGTGACGATGAAGAACTGTCTGTTGATGATGATGGTAAGGATGATGATGATGATGATGTGGAAGGGTCGGAGCAATGTGATGAAAAGATGTTTGAGGGCTGTGTTGATGTTGAAAAGGAATTAAAAATTGGTGAAAGTGGAGAAATTTGTGAGATTGCTGATAAAGATGGATACTTTGTTGATGAAAAATGTGATTTGGAAACTGAAAAACCAATTACAATAAGTGTGGGTGGTGTTTCTAGCCGAACTCGTAGCAAAACTATTCCATTGTTTGGTTGTCTTTCACTTGATGGTTTATCTTCAACGAGGAGAAAGAGTGATGAAGATGAAATGGTTTTGGGATCTGTTACTGGGTCTAGAAAAACGAGGGTAAAGGGAGAAGCTTTTGTGGATCTTGAGAATGATGAGGTTATTCCCATCCACGATGATGATGTTGATGATGAAGATGAAGAAGGGTTGGAGGAATTTGGTGAGAAGATGTTTGAGGGTGGTGTTGATGTTATAAAGGAAGTGAAATGTGATGAAAGTGGAGGAAGTGGTGAGATTGCTGATAAAGATGAAAACTTTGTTGTTGAAAAGTTTTCAGATGAATCTGGTGAAAGTGATGACGAAGAACTTGTTGATGTTGATTCTGATGATGATGATGATGATGCAAAAGAAGAAGAGGAAGATGAGAGTGAGGAAAATGAGACCAGTGATGAGGATTTTAGAGTTGATGAGGATGAAGATGAAAGTTCTCCTTATGTTAATGATGACGATGGTGGTAAGGATGATGATGATGATGATGGTAAGGTGGAGGAAGGAGAGGAGGGTTTGGAAAAGTTGTGGCAAGAATGTGCCATGATGGAGGAGCTGTCGAAGGATAACAAAAGTGGAATTTCTGAGAAGAATAATGAGGAGGTATGGATTGAGAGTAGTGCTTTTTCTGTTAACAACGATGGTTCGAAACATGCATATCATTCTAGTGTAACAACCTCTGTTACCTTTGAGAAAAAGGGTTATTTAATGAAGAGTTCTTCCAACCTGAATAAAGTATCCGAGAAAAGCAAATCAAAGAGAGTGAACATAATAAACATGCAAAATGTCAGTGATGAAGATGATATTCAAGTTATTGCTGATCATCCCAAGAGTTTTGGTTCTTCTAAGCTTCACAAGGGCGACACAAATAATGTAGAGGAGGAGGAGGAGGAGAAGGTTTGGAGAAAATACGATGTGGTGGAAGAGGATGAAGACGAGGGTATGAAAAAGTTGTGGCAAGAATATGACAGTGTGTTGGAGGAGGTGAAGGATAAAAAAAATGGTATTTCTGAGATGAATACCGAGAATAAAACATCCAAGAAGCGCAAGTCAAAAAGTGTAGACATAGAATGGTATGTCTGTGATGATGTTCAAGTTATTGCTGATCATCCCAAGAGTTTCTGTTCTTCTAAGCTTCACAAGGGTGAGAGAAATAATGCCAAAGCAAAAGCAAAAGATTATGTTAAAGCTAATGACATTGTGAATGTTGATGATTATGATGAAGGAAAAGAAGTCAAAGGTTTAGGCGTTGGAGGAGTTTCTTTGTTTCAAGCAAAACAAGAAAAGATGAGGTTTTCAGATACACAAAAAATGCCGGAGAACAAAGGAAGGGATTATAGAGGCAGAGTTAACATCTGGAATGGTGAGAAGAAGGCAACCATGGAAAACAATGGTTTGAATCGAAGGGTAAACAGCACACTGTTTATGCGGAAGGAGTTGCATTTAGCTAAACTCCTTGCTGAGTGCTATTGGGGAGACAAGAACGATACCACCAAGAATGATTCAATTCAATTGGAGATCAAGGATGTTGCCGACGCCGTTGATCGGAGAGATTCACGGCCACCACCGGTTTGTGTAGAGACACCATCATTGATATGGAGCCTAAAAAAGGTTGAAAAAGTGGAAAAGACTAAGGAGGAGGAGGAACAGGAAATGTTATGGGATCAAGTGGATACATCCCTTAGAGAAATAGAAGCTGAATCCATGATTGGAAGTTTAGGGACAAATGAAGTTAAACAAGAAAACATGGGAAATCCATCTACTCTCTGTGAACATGATACTCGTCTCGACGACGAGATTGGTGTATATTGCAGATGGTGTGGTGTGGTTATCACTGAGATCAAATATATCTCACCACTGGTGGTGGATCGATTTCCCTATGAAGGTTCTGGAAAAAGAACTTCATTTGATGATTCAGTTAATGCCTCACTCTATGATGGATCTCAATTCAATGTTTCTGATGAAGAATCAGTGCCGAATTTCTCTTATAATGAAGGCACAGTTTGGGACCTAATTCCTGGTGTGAAACAAACTTTATATCCTCATCAACAAGAAGGCTTCGAGTTCATTTGGAAAAACATGGCAGGAAACATTCATCTTCACAAGTTGAAGAACGCCAATCCTCGCAAAGAGGGTGGCTGCATTATCTCCCATGCTCCTGGAACTGGAAAGACAAGGTTGACAATAGTGTTTCTCATGGCATATATGAAAGTGTTCCCGAAATGCTTGCCGGTTATTGTTGCTCCTGCGGGTTTGTTACTTACTTGGGAAGATGAGTTCAAAAAATGGGACATTGGAGTTCCATTTCACAATCTAAACAGTTCTGAGTTATCCGGTAAAGAGCACAATGATGCCATTAATCTGTCTCATACACGGCAAAGTAAGGGCGAGATACGTATGGCGAAACTAATTTCATGGTTCAAAGAAAAGAGCATTCTTGGAATCAGTTATGCTTTGTACAAGATCCTAGCCTTTGGAGGTGGGGAATCTAAAGATAAGAAAAAGAAAAAACATACGCAAGAGAAAAAACAGGTGGATGTGGAGAAGAGAAAAGAAAATGATGTTATGCGAAAGGTTCTACTCGAAGTTCCTGGTTTGTTAATTCTAGATGAAGGACACACACCGAGAAATCGAAGAAGTAATATTTGGAAGGTGTTATCGGAAGTTCAAGCGCGTAAGCGAATTATTCTTTCCGGAACTCCTTTTCAAAATAGCTTGTTGGAACTTTACAACACATTTAGCTTAGTGAAGCCTTCTTTTCCTAACACGATACCTAGTGAGCTGAAAAAATTTTGCGAACGCAAAAGTAAATCAAAAGAATGGAGTTGGGAAGCGGATTCTGGCAATAGTACAACAGGTAATTCTTCTGATGATAAGATCATGCAGTTGAAATTGATTATGGATCCGTTTGTTCATGTGCACAAAGGAGCTATCCTTCAAAAGAAGCTTCCCGGGTTAAGAGATTGTGTACTGATTTTGAAGCCGGACAGTTTGCAGAAGCAAATTATCGAGAGCATTCAAAGTGATCAGAACACATTGATCTTTGAGCGTAAGCAGACAGTGGCATCTGTTCATCCATCTCTTTTCCTCCAATGCAAACTCTTGGAAGAAGAAGAATCTGTTGTTGACAAGGATCGGCTAGAAAAGCAATGGTTAAATCTATATGGCGGTGTCAAAACAAAGTTTTTGTTGGAGTTTGTTAAACTTTGTGATGCTAATAATGAGAAAGTTCTTGTGTTCAGCCAATTCCTCGATACTTTAAGCTTAATCGAAGACCAATTAAACTCGGTTTTCAAATGGACCAAGGGAAAGGAAATTCTGTACTTGGATGGAAATGTTGATCCAAATGAAAAGCAGTCCCGAATCCATAGCTTCAATGATGCAAGTAGCCAAGCAAAGATTATGCTTGCTTCAACGAGAGCTTGTTCCGAGGGAATCAGCTTAGTTGGAGCTTCAAGGGTTGTGCTACTCGACGTTGTATGGAATCCATCCGTAGAACAACAGGCTATCAGCAGAGCTTATCGGATTGGACAAAAGAGGGTTGTGTACACTTATCATCTTCTCACTCAAGGGACTGCTGAATACACAAAATATTGTAAACAGGCCCATAAGGACCGATTATCTGAACTCGTATTTACAGCCAAAAATACCAATAATGATGATGAGTCAAAGAGCTGCGCTGGGAACATTGAAGATAGAATTCTTGATCAAATGATGCGGCACGAAAAGCTCAAAGACATGTTTGTTAAGTGTGTAGTACAGCCGAAGGAGCAAGATTTGGTCGATAGTTTCGCCTATTGA 5118 0.3931 MTASVSSGTRSKNVSLFGCLSLGGSSKSRKNVKNDMGLDSVSAGSKRMRFKEKPFVTMDGVSSRTRSKNVRLFDCLSLDSSSKLRKNVEADKGLDSVSVSGSKRMRVKEAPFGMIDCVSSRTRSKNVPLFGCLSPDGSSLKRRKIDEDDMGLESVSGSKERKVNEDVEGLEQCDEKKYEGDGEKEVKSDENGEIDAKDENFNEEKCDLEHENPITVSVGGVSSRTRSKSVPLFGCLSLDVLSSKRRKSDEDGIVLGSVCGSRKMRVRGEVLVVPENDKVISIHDDDVDDEEGLEQCGEKMFEDGVDVIKEVKSDESGGNGEIAGKDENFVDENYSDESDESDDEELSVDDDGKDDDDDDVEGSEQCDEKMFEGCVDVEKELKIGESGEICEIADKDGYFVDEKCDLETEKPITISVGGVSSRTRSKTIPLFGCLSLDGLSSTRRKSDEDEMVLGSVTGSRKTRVKGEAFVDLENDEVIPIHDDDVDDEDEEGLEEFGEKMFEGGVDVIKEVKCDESGGSGEIADKDENFVVEKFSDESGESDDEELVDVDSDDDDDDAKEEEEDESEENETSDEDFRVDEDEDESSPYVNDDDGGKDDDDDDGKVEEGEEGLEKLWQECAMMEELSKDNKSGISEKNNEEVWIESSAFSVNNDGSKHAYHSSVTTSVTFEKKGYLMKSSSNLNKVSEKSKSKRVNIINMQNVSDEDDIQVIADHPKSFGSSKLHKGDTNNVEEEEEEKVWRKYDVVEEDEDEGMKKLWQEYDSVLEEVKDKKNGISEMNTENKTSKKRKSKSVDIEWYVCDDVQVIADHPKSFCSSKLHKGERNNAKAKAKDYVKANDIVNVDDYDEGKEVKGLGVGGVSLFQAKQEKMRFSDTQKMPENKGRDYRGRVNIWNGEKKATMENNGLNRRVNSTLFMRKELHLAKLLAECYWGDKNDTTKNDSIQLEIKDVADAVDRRDSRPPPVCVETPSLIWSLKKVEKVEKTKEEEEQEMLWDQVDTSLREIEAESMIGSLGTNEVKQENMGNPSTLCEHDTRLDDEIGVYCRWCGVVITEIKYISPLVVDRFPYEGSGKRTSFDDSVNASLYDGSQFNVSDEESVPNFSYNEGTVWDLIPGVKQTLYPHQQEGFEFIWKNMAGNIHLHKLKNANPRKEGGCIISHAPGTGKTRLTIVFLMAYMKVFPKCLPVIVAPAGLLLTWEDEFKKWDIGVPFHNLNSSELSGKEHNDAINLSHTRQSKGEIRMAKLISWFKEKSILGISYALYKILAFGGGESKDKKKKKHTQEKKQVDVEKRKENDVMRKVLLEVPGLLILDEGHTPRNRRSNIWKVLSEVQARKRIILSGTPFQNSLLELYNTFSLVKPSFPNTIPSELKKFCERKSKSKEWSWEADSGNSTTGNSSDDKIMQLKLIMDPFVHVHKGAILQKKLPGLRDCVLILKPDSLQKQIIESIQSDQNTLIFERKQTVASVHPSLFLQCKLLEEEESVVDKDRLEKQWLNLYGGVKTKFLLEFVKLCDANNEKVLVFSQFLDTLSLIEDQLNSVFKWTKGKEILYLDGNVDPNEKQSRIHSFNDASSQAKIMLASTRACSEGISLVGASRVVLLDVVWNPSVEQQAISRAYRIGQKRVVYTYHLLTQGTAEYTKYCKQAHKDRLSELVFTAKNTNNDDESKSCAGNIEDRILDQMMRHEKLKDMFVKCVVQPKEQDLVDSFAY* 1706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2535 1705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1304 1663 IPR027417 -
Tpr6g2535 1705 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 218 378 IPR044567 GO:0080188
Tpr6g2535 1705 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 417 1703 IPR044567 GO:0080188
Tpr6g2535 1705 CDD SF2_C_SNF 1498 1627 - -
Tpr6g2535 1705 MobiDBLite consensus disorder prediction 537 607 - -
Tpr6g2535 1705 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1144 1358 IPR014001 -
Tpr6g2535 1705 SMART helicmild6 1527 1616 IPR001650 -
Tpr6g2535 1705 Gene3D - 1419 1701 IPR027417 -
Tpr6g2535 1705 Gene3D - 1090 1407 IPR038718 -
Tpr6g2535 1705 Pfam SNF2-related domain 1131 1456 IPR000330 GO:0005524|GO:0140658
Tpr6g2535 1705 Pfam Helicase conserved C-terminal domain 1503 1616 IPR001650 -
Tpr6g2535 1705 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1501 1662 IPR001650 -
Tpr6g2535 1705 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 218 378 - -
Tpr6g2535 1705 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 417 1703 - -
Tpr6g2535 1705 MobiDBLite consensus disorder prediction 311 369 - -
Tpr6g2535 1705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1102 1371 IPR027417 -
Tpr6g2535 1705 SMART ultradead3 1114 1366 IPR014001 -
Tpr6g2535 1705 MobiDBLite consensus disorder prediction 149 204 - -
Tpr6g2535 1705 MobiDBLite consensus disorder prediction 332 365 - -
Tpr6g2535 1705 MobiDBLite consensus disorder prediction 311 331 - -
Tpr6g2535 1705 MobiDBLite consensus disorder prediction 515 617 - -
Tpr6g2535 1705 MobiDBLite consensus disorder prediction 515 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2535 Tpr-Chr6 27684957 27691640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2535 1512 1646 RAD5 or RAD16-like Gene Family AT5G43530 37.778 9.02e-18 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr6g2535 SNF2_N 1.6e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2535 K10875 - gmx:100806733 851.662