Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2529 ATGATTTACACTGAAGTTATTTCGTTTGAGTTGAATGGAGTGCAAATCAAAACCACCGTGACCAATGAAGTAAAAGTGCTCGATGAACACATATCGTCTTTTTTACAATCTACCGACAATCACAGAACTAAGGTTATCGGTTTTGATATGGAGTGGCGTCCGCCTTTCATGTTGGAGCCTGCAATCTTTCAACTTTGTGATGGTAATTCATGTCTTATTTTCCACTTACATCCTAAGATTTCGGTTCCTCTTTCACTCCGTAATTTTCTTCGTCAGCCAAATTATACCTTTGTTGGTTGCGGTATTAAAGATGATTTTGAGTACTTGAAGAAACACAGTGGCATTGGATGCAAAAATGCTGTAGAACTTGGGACCTTGGCTGCTACTCTGATGGATAAACCTCATTTAGGTTTTTGCGGCGTTGATGAGCTAGCATTTGTGGTCAATAAACTCGATCTTCACAAATACAGGCCTTTAAACTTGGCTTTTGATTGGGATAGTTATCCGCTCAGGGAAGAACTTGCTAAGCTTGCTACTGTTAATGTTTACTCTTATCATAAGATTGGAAGTGCATTGTTTGAAAGGTACTCTCGAGATAAAACTCAAAAGGACAGCAACGGAAGTGAAGTTACTGTCAAAAAGTACTCTCGAGATTTCCTTTTAAAATTTGCAGAGCAGTTCTCTGAGGTTCCCGAAGGGTTTGAAACAACGGCAGACATAGCTGAAGCTTTGATGGTTTTGAATATTGGTTCACGTGTTATGGGACGCGACACACATCCTTTTCCTGGAAGAAATACAGATAGGTCAGGTGGGATGTCTCGTATAGATTGTCGTGGGAGTGGTGTTATCGAGGATGATAAACGGAGTAAAGTTCCTGGTGCCTTTCATTATGATAATGGTAATGTAGGTAATACAGGATTCCGACCTGCACGTGGTGGAAATGCTGGTGTTTTAAGGAATCCACACCCACAAGGAACTGTGCAGTATGGTGGAGGGATTCTTTCTGGGCCAAAGGTGGGTATGATGACAGATGAGAAGAAGTATGAGGTTGGTATGGTGACAGATGAGGAACAGGCAAAGCAGAGACAGTTGAAAGGTATATTGAACAAATTAACTCCCCAGAATTTTGAGAAGCTTTTTGAGCAGGTTAAAGCAGTTAATATTGATAATGTAGTCACTCTCACTGGTTTCGTCTCCAAAATCTTTGAGAAGGCCTTGATGAAACCCACTTTCTGTGAAATGTATGCCAATTTATGTTTTCATCTGGCAGCTGCGTTACCTGATCTCAGTCAAGACAATGAAAAGATAACATTTATGAGATTATTGTTAAATAAGTGCCAGGAAGAATTTGAGAGGGGTGAGAGAGAGCAAGAAGAAGCTAATAAAGCTGATGAGGGTGAGGTGAAACAGTCTGATGAGGAAAGAGAAGCAAAACGATCCAAGGCCAGAAGACGAATGTTGGGTAATATCCGGTTAATTGGAGAACTATATAAGAAGAAAATGCTGACAGAGAGAATAATGCACGAGTGCATAAAAAAGTTACTTGGTCAGTGTCAGAATCCGGATGAAGAAGACATCGAAGCGTTGTGCAAACTGATGAGTACTATTGGGGAGTTGATTGACCACCCCAAAGCCAAGGAACATATAGATGTATATTTTGAAAGAATTAAATTATTATCAAACAACATGAATTTGTCTTCTAGGGTGAGGTTCATGTTAAAGGATACCATTGATTTGAGAAAGAATAGATGGCAACAAACGAGAAAAGTTGAGGGGCCAAAAAAGATTGAAGAGGTGCACCGGGATGCTTCCCAAGAGAGGCAATCCCAAGCTGGTAGGCTGGGTTGTGGTATGGGTATTAGTACACCAAGAAGGACCACCCCTACGGATTTTGGTTCAAGAGGTTCATCTATGTTATTCCCTTCTAATGCTCAGATGGGTGGATTGCCTAATCAAATGCGTGGGTATGGTTCTCAGGATGTTCGTGGGTATGAAAGGCAATCTTATGAGGCTAGGCCGCTATCTATTCCCTTGCTTCAAAGATCTTCAGGTGATGAGGTAATAACCTTGGGACCCCAAGGTGGTCTTGCTAGAGGAATTTCTAGCAGAGTTCCAGCTGCTGTTTCCAGTTTCGGTGGTCCTAATGGTTACAGTAATTTATCAGAGCGCGCTTCATACACCCCTAGGGAGGACCTCACACCAAGATATGTTCCGAATAGATTTGCTGGTCCAACTGCTTATGATCAATCAAGTGCTCCAGAGCATAGTGTGAATTACGGTAATAGGGATTTGGGAAGTGCAGATAGGTTTCTTGATAGACCTGTTGTAAATCCACCTCCTGCCCGAGCACAAGAGACTGCACTCTCCCAGAATACCTCTTTTGAAAAGGGTTTGTCAGAAGAGAAACTACAGAAGATGTCCATGGCAGCAATTAAAGAATACTATAGTGCTAGAGATGTAAACGAAGTTGTTTTGTGCGTCAAAGATCTGAACTCTCCAAGCTTTCATCCTTCCATGGTTTATCATTGGGTCACAGATTCATTTGAGAGAAAGGACACAGAGAGAGATCTTTTGGCCAAACTGCTGATCGACCTTGTGAAATCTCATGACTGTACCTTAAGTCAACCCCAGCTCATTAAAGGGTTGGAATCTGTTCTAAGTACTCTGGAAGATTTTGTTACGGATGCCCCAAGAGCACCGGAGTATCTTGGTCGCATTTTTGCCAAAGCTATAACAGAGCATGTAGCCTCTTTGAAAGAGATTGGGCTGTTAATACGTGACGGCGGAGAGGAATCAAGTAGCCGCTTACAATTTGGACTTGCAGCTGACATTCTCGGAAGTACCTTGGAAGTGATACAAACAGAGAAGGGTGATGCTTTCTTGAATGAGATCCAGACAAGCTCCAACTTGCAATTGAAGACCTTCTGTCCGCCAGAACCTATTAAATCCCGGAAGCTAGAAAAATTCCTTTAG 2973 0.4191 MIYTEVISFELNGVQIKTTVTNEVKVLDEHISSFLQSTDNHRTKVIGFDMEWRPPFMLEPAIFQLCDGNSCLIFHLHPKISVPLSLRNFLRQPNYTFVGCGIKDDFEYLKKHSGIGCKNAVELGTLAATLMDKPHLGFCGVDELAFVVNKLDLHKYRPLNLAFDWDSYPLREELAKLATVNVYSYHKIGSALFERYSRDKTQKDSNGSEVTVKKYSRDFLLKFAEQFSEVPEGFETTADIAEALMVLNIGSRVMGRDTHPFPGRNTDRSGGMSRIDCRGSGVIEDDKRSKVPGAFHYDNGNVGNTGFRPARGGNAGVLRNPHPQGTVQYGGGILSGPKVGMMTDEKKYEVGMVTDEEQAKQRQLKGILNKLTPQNFEKLFEQVKAVNIDNVVTLTGFVSKIFEKALMKPTFCEMYANLCFHLAAALPDLSQDNEKITFMRLLLNKCQEEFERGEREQEEANKADEGEVKQSDEEREAKRSKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQCQNPDEEDIEALCKLMSTIGELIDHPKAKEHIDVYFERIKLLSNNMNLSSRVRFMLKDTIDLRKNRWQQTRKVEGPKKIEEVHRDASQERQSQAGRLGCGMGISTPRRTTPTDFGSRGSSMLFPSNAQMGGLPNQMRGYGSQDVRGYERQSYEARPLSIPLLQRSSGDEVITLGPQGGLARGISSRVPAAVSSFGGPNGYSNLSERASYTPREDLTPRYVPNRFAGPTAYDQSSAPEHSVNYGNRDLGSADRFLDRPVVNPPPARAQETALSQNTSFEKGLSEEKLQKMSMAAIKEYYSARDVNEVVLCVKDLNSPSFHPSMVYHWVTDSFERKDTERDLLAKLLIDLVKSHDCTLSQPQLIKGLESVLSTLEDFVTDAPRAPEYLGRIFAKAITEHVASLKEIGLLIRDGGEESSSRLQFGLAADILGSTLEVIQTEKGDAFLNEIQTSSNLQLKTFCPPEPIKSRKLEKFL* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2529 990 Coils Coil 443 463 - -
Tpr6g2529 990 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 197 990 IPR045208 GO:0003743
Tpr6g2529 990 SUPERFAMILY ARM repeat 796 985 IPR016024 -
Tpr6g2529 990 MobiDBLite consensus disorder prediction 588 607 - -
Tpr6g2529 990 SUPERFAMILY Ribonuclease H-like 38 192 IPR012337 -
Tpr6g2529 990 Pfam 3'-5' exonuclease 34 173 IPR002562 GO:0003676|GO:0006139|GO:0008408
Tpr6g2529 990 ProSiteProfiles MI domain profile. 802 926 IPR003891 -
Tpr6g2529 990 SMART ma3_7 803 917 IPR003891 -
Tpr6g2529 990 Gene3D - 4 193 IPR036397 GO:0003676
Tpr6g2529 990 SUPERFAMILY ARM repeat 355 585 IPR016024 -
Tpr6g2529 990 MobiDBLite consensus disorder prediction 453 482 - -
Tpr6g2529 990 Pfam MIF4G domain 361 582 IPR003890 GO:0003723|GO:0005515
Tpr6g2529 990 Pfam MA3 domain 805 913 IPR003891 -
Tpr6g2529 990 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 2 197 990 - -
Tpr6g2529 990 SMART if4_15 361 583 IPR003890 GO:0003723|GO:0005515
Tpr6g2529 990 Gene3D - 794 990 - -
Tpr6g2529 990 MobiDBLite consensus disorder prediction 588 632 - -
Tpr6g2529 990 Gene3D - 361 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2529 Tpr-Chr6 27610320 27614598 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2529 211 989 Eukaryotic Initiation Factors Gene Family AT3G60240 54.202 0.0 765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2529 K03260 - gmx:100790680 1095.11