Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2517 ATGTCTGAGGGTTGCTCAGATGATGTTAAAAATGAAAACTTTAGCAATGTAAAGTGTGGTTTCGAACGGGAAAACTCTGTTGATGAAGATGGAAGTGAGGAAAACTCTGAAGATGATTCTGGTGACAGTAGTGAAGAAAATGAAACCAGTGATGAAGATTTTGAAGTTGAGGAAAACTCTGAAGAAGATTCTGATGATAGTAGTGAAGAAAATGAGACTGGTGATGAAGATTTTGAAGTTGATGAGGTGAATGAAATTTCTGACAGTGATGAAAACTCTTCTTTATATGTTGGTTATTACAATGTAAACTATTACAAGAAAAAATGTGAAATTTCTACCAAACCATTGGAGGAGGAAGAGATTGAGAAGTGTTCAATGAAGGGTTCTTCTTCAAAGGTTAATGAAGTTTCTCAGAAACAGGATAAGAAGAGTGTTGATTCTTCTTCAAGGGCTTTTGTAGATGAAAATGAAAAGAATATTAAGGAGAAATCTAGTTTAAGACAACAACATAGTGTATTCATGGTTGAAGATATAGACAAAGACAAAGACAATGGTAAAGCTAATGCTAATGACACTACGAGTCCTGGTGATTCAGGTGAAGCAGAATCACTCGCAGTGTCATTACAAAATGAAAAGTTAGCTAAACACAAAATTGTGGAGAACAAGGGAAGGGGTAAGAGAGGTGGAAATAGAATTAGTAATGGTAAGAAGAAGAAAATCATGGATGACAAAAGTGGTCAAAGCAAGTTAAAAAAGGAGCTGCACAAACTTCTTGAGGAATGGGAGTACTATTTGGGAACCAAAAACACTAAGCAGAATGGTGATTCAGTTGTGTTGGAGGTGAAGGATGATGATGGTGTTAACCGGCAAGATACGCGTCCACAAGATACTATTTGGAGTCTTGGTAAAAAAGTTGAAGAAGCAGCGCCAAAAATGGAGGAAGAAGAGTTGTGGGATGAAATGGATAGAGTGAGGAGAGAAGATGAAGTTGAATCCATGATTGGCAATATAGGGACCAATGTAGCTTCTAACAAAAACATGGAAGATACATTTTCACTATGTAACCATGACACTCGTCTCGATGAGGAGATTGGAGTATATTGCAGGTTGTGTGATTTGGTTGTCACTGAGATCAGATATATCTCAGAGCCGGTGGTGGATAGATATCCGAATGAAGGTTCAGGAAGAAGGGCGTCAATCGGTGGAGATGATGTTTCACTCTTTGATTGGTCTCACATCAATGTTTCTGATTATGACTCAAAGACTAATTTTTCTCACAATGAAGGCACTGTCTGGGACAAAATTCCTGATGTGAAGCAAACCTTATACCCTCACCAACAAGAAGGTTTTGAGTTCATCTGGAAAAACATGGCAGGAAGCATCGAGCTTCAAAATTTAAAGAATGCTGATCCTCGTAGCGAAGGTGGCTGCATTATTTCTCATGCTCCTGGAACCGGAAAGACAAGGCTGACCATAGTGTTTCTCAAGGCATATTTGAAAGTGTTTCCAAAATGCATGCCAATTATTGTCGCTCCTGCAAGTATACTACTAACATGGGAAGAGGAATTCAAAAAATGGGACATTGGAGTTCCATTTCACAATTTAAGCAGTCGGGAGTTATCTGGTAAAGAGCATGCTGATGCGGTTAACACATTCAATATGTCTAATACACGGCATGGTATTGAAGAAACTCGAATGGCGAAACTGATATCATGGTTCAAAGAAACGAGCATTCTTGGAATCAGCTACGACTTGTATGGAATGAAATGCAAAGATACGAAAAAGAAAAAGCATGAAAGTGTGAAGGAGAGAAAAAGGAAATGTGATATGCAAAAAATTCTACTTAAAGCTCCTGGTTTGTTAGTTTTGGATGAAGGACACACACCAAGAAATCAAAGAAGTCATATTTGGAAGGTGCTATCGAAGATTCAAACGCAGAAACGAATCATCCTTTCTGGAACTCCATTCCAGAACAATTTCTGGGAGCTTTACACCACTTTGAGCTTAGTCAAGCCTTCTTTTCCTGACACGATACCGCCTGAGCTAAAAAGATTTTGCCATGAGCGGAGACGTAAATCATCTAAACAATGGAGTTGGGAACCTGTTTCGGCCAACACAACAAGAAACACTTCTGATGATAAGATTGAGAAGTTGAAATTGCTAATGGATCCCTTTGTGCATGTTCACAAAGGTGCGATCCTTGAAAATAAGCTTCCCGGGTTAAGGGACTGTTTGGTGACTTTGAAGGCCGGTAGTTTGCAGACTGAAATCCTGAAGATAATTAAACGTTCTCAGAACACAGTATTTAACTTTGAGCATAAGATTGCATTGACATCCGTCCATCCATCTCTTTTACTTGAATGTGATCTTTCAGAAGACGAAGAATCTGTACTCAACAAGGATCAGCTGGAAAAGATAAGACTGAACCCGTATGAAGGTGTGAAAACAAAATTTTTGTGCGAGTTAGTTCGGCTTTGTGATTCTCTTAACGAGAAAGTTCTTGTGTTCAGCCAATTCCACGCTCCTTTACAATTAATTAAAGACCAATTAAACTCGGCTTTTAACTGGTCTAACGGAGAAGTTCTGTTCATGTCTAGCAAAGATCCTCCAAAGGATAAGCAGTCCATAATCCATAGCTTCAATGATGAAAATAGCAAAGCGAAGATTCTACTTGCAGCTACAAAAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTTGTGCTTCTTGATGTTGTATGGAATCCTTCAGTCAAAAGACAGGCTATCAGCCGAGCGTATAGGATTGGACAGAAGAAGGTCGTATACATATACCAGCTTCTCGCTGAAGGGACTACCGAGGAAGAAAAATATGGTAAACAGGCCGAAAAGGATCGGTTATCTGAGCTCCTTTTTTCAGCTAAAACCGCCGATAATGATGGTGAGTCCAAGAATTATGCTGTGAAATTTGAAGATAGTGTTCTTGATAAGATGACTCGGCATGGAAAGCTCAGAGACATGTTTGTTGAGTGCGTGGTACTGAGGAAGGAGCGTGATTTGGTCTGA 3051 0.3933 MSEGCSDDVKNENFSNVKCGFERENSVDEDGSEENSEDDSGDSSEENETSDEDFEVEENSEEDSDDSSEENETGDEDFEVDEVNEISDSDENSSLYVGYYNVNYYKKKCEISTKPLEEEEIEKCSMKGSSSKVNEVSQKQDKKSVDSSSRAFVDENEKNIKEKSSLRQQHSVFMVEDIDKDKDNGKANANDTTSPGDSGEAESLAVSLQNEKLAKHKIVENKGRGKRGGNRISNGKKKKIMDDKSGQSKLKKELHKLLEEWEYYLGTKNTKQNGDSVVLEVKDDDGVNRQDTRPQDTIWSLGKKVEEAAPKMEEEELWDEMDRVRREDEVESMIGNIGTNVASNKNMEDTFSLCNHDTRLDEEIGVYCRLCDLVVTEIRYISEPVVDRYPNEGSGRRASIGGDDVSLFDWSHINVSDYDSKTNFSHNEGTVWDKIPDVKQTLYPHQQEGFEFIWKNMAGSIELQNLKNADPRSEGGCIISHAPGTGKTRLTIVFLKAYLKVFPKCMPIIVAPASILLTWEEEFKKWDIGVPFHNLSSRELSGKEHADAVNTFNMSNTRHGIEETRMAKLISWFKETSILGISYDLYGMKCKDTKKKKHESVKERKRKCDMQKILLKAPGLLVLDEGHTPRNQRSHIWKVLSKIQTQKRIILSGTPFQNNFWELYTTLSLVKPSFPDTIPPELKRFCHERRRKSSKQWSWEPVSANTTRNTSDDKIEKLKLLMDPFVHVHKGAILENKLPGLRDCLVTLKAGSLQTEILKIIKRSQNTVFNFEHKIALTSVHPSLLLECDLSEDEESVLNKDQLEKIRLNPYEGVKTKFLCELVRLCDSLNEKVLVFSQFHAPLQLIKDQLNSAFNWSNGEVLFMSSKDPPKDKQSIIHSFNDENSKAKILLAATKACSEGISLVGASRVVLLDVVWNPSVKRQAISRAYRIGQKKVVYIYQLLAEGTTEEEKYGKQAEKDRLSELLFSAKTADNDGESKNYAVKFEDSVLDKMTRHGKLRDMFVECVVLRKERDLV* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2517 1016 Pfam SNF2-related domain 452 760 IPR000330 GO:0005524|GO:0140658
Tpr6g2517 1016 MobiDBLite consensus disorder prediction 173 187 - -
Tpr6g2517 1016 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 23 1015 IPR044567 GO:0080188
Tpr6g2517 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 693 IPR027417 -
Tpr6g2517 1016 MobiDBLite consensus disorder prediction 136 165 - -
Tpr6g2517 1016 Pfam Helicase conserved C-terminal domain 818 932 IPR001650 -
Tpr6g2517 1016 SMART helicmild6 844 932 IPR001650 -
Tpr6g2517 1016 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 821 977 IPR001650 -
Tpr6g2517 1016 MobiDBLite consensus disorder prediction 188 205 - -
Tpr6g2517 1016 Gene3D - 412 723 IPR038718 -
Tpr6g2517 1016 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 23 1015 - -
Tpr6g2517 1016 MobiDBLite consensus disorder prediction 27 88 - -
Tpr6g2517 1016 MobiDBLite consensus disorder prediction 1 95 - -
Tpr6g2517 1016 MobiDBLite consensus disorder prediction 123 248 - -
Tpr6g2517 1016 Gene3D - 741 1011 IPR027417 -
Tpr6g2517 1016 MobiDBLite consensus disorder prediction 213 227 - -
Tpr6g2517 1016 CDD SF2_C_SNF 815 943 - -
Tpr6g2517 1016 SMART ultradead3 438 685 IPR014001 -
Tpr6g2517 1016 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 468 673 IPR014001 -
Tpr6g2517 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 972 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2517 Tpr-Chr6 27525001 27528835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2517 831 962 RAD5 or RAD16-like Gene Family AT5G43530 37.121 4.89e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr6g2517 SNF2_N 1.9e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2517 K10875 - gmx:100812737 811.601