Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2516 ATGGCTAGTGAATTTCCTGAGGTTATGAAGCCAATCCACTTTATCAAGATTATACTTACTGAAACCCTTCATCAAGAAAAGCTTATGATGCCAATAAAGTTTGTGAAGAAATATGGAGAAAGTTTACCAAATACTATATATTTGAAGACTCCAAATGGTGCAAAGTGGGAACTAAATTTGGTAAAAAGTGATGGCAAAATATGGTTTGAAAAGGGTTGGAAGGAATTTGCAAAATATCATTCTCTAGCTCATGGTTATCTTCTACTTTTCAGATATGAAAGAACTTCCAATTTTCAGGTGCACATCTTTGAAAAGAATGCTTTAGAAATAAATTACCCCTTCCAAAGAGTTGCAACTAAAAGGGTCTCCAATGTTCAAGAAAATAAACCTACAAGTGGTGAAAATTGTAGAGTAGCTCAAAAGAGAAAAGCTAACTCCTCCTTTGAATTGCATCACAGTGACAAAAAATGTAAAGGGAAACAAGTGATTACTACTCCTATTGAAAGAGCAAAATCGTTCAAAACATGTAATCCGTCCTTTGTTCTTGTCATGGGTGCATCATACGTTAAAAGTCGTTTTATTCTGACTATACCATCTAAGTTTGGTAAGACACACTTTGATTTGGATAAGAAAAGAGGAGATATTTATTTTCAGGTGTTAAATGGAAGAGTTTGGCCTGCACGGTACTCTATAAGGATGTGCAGTACAAGACTAAAATTTGAACTCACAAGTGGATGGAAGGAATTTGCAAAGGACAATAACTTGAAAGTTGGTGATGCTTGCAACTTTGAGCTCATCTCTAACACTATACTTACCTTCAATGTTCACATCTTCAGACAGCCAGCCAGTGACAACACAAATCTATGA 867 0.3529 MASEFPEVMKPIHFIKIILTETLHQEKLMMPIKFVKKYGESLPNTIYLKTPNGAKWELNLVKSDGKIWFEKGWKEFAKYHSLAHGYLLLFRYERTSNFQVHIFEKNALEINYPFQRVATKRVSNVQENKPTSGENCRVAQKRKANSSFELHHSDKKCKGKQVITTPIERAKSFKTCNPSFVLVMGASYVKSRFILTIPSKFGKTHFDLDKKRGDIYFQVLNGRVWPARYSIRMCSTRLKFELTSGWKEFAKDNNLKVGDACNFELISNTILTFNVHIFRQPASDNTNL* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2516 288 PANTHER B3 DOMAIN-CONTAINING 9 280 - -
Tpr6g2516 288 Pfam B3 DNA binding domain 15 105 IPR003340 GO:0003677
Tpr6g2516 288 Pfam B3 DNA binding domain 180 280 IPR003340 GO:0003677
Tpr6g2516 288 SUPERFAMILY DNA-binding pseudobarrel domain 176 279 IPR015300 -
Tpr6g2516 288 SUPERFAMILY DNA-binding pseudobarrel domain 11 106 IPR015300 -
Tpr6g2516 288 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Tpr6g2516 288 Gene3D - 161 281 IPR015300 -
Tpr6g2516 288 Gene3D - 8 107 IPR015300 -
Tpr6g2516 288 SMART B3_2 180 281 IPR003340 GO:0003677
Tpr6g2516 288 SMART B3_2 14 106 IPR003340 GO:0003677
Tpr6g2516 288 ProSiteProfiles B3 DNA-binding domain profile. 180 281 IPR003340 GO:0003677
Tpr6g2516 288 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 280 - -
Tpr6g2516 288 CDD B3_DNA 178 279 IPR003340 GO:0003677
Tpr6g2516 288 CDD B3_DNA 13 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2516 Tpr-Chr6 27517481 27519417 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2516 167 279 B3 DNA Binding Superfamily AT3G18990 36.283 2.09e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr6g2516 B3 2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2516 - - mtr:MTR_7g050580 398.667