Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2514 ATGGCTAGTGAATTTCCTGAGGTTAAGCAATTCCACTTTTTGAAGATTATACTTACTCAAACCCTTCATCAAGGAAAGCTTATGATACCAGTAAAGTTTGTGGAGAAATATGGAGAAGGTTTACCAAATACTATATATTTTAAGACACCAAATGGTGCAAAGTGGGAACTAAATTTGGTAAAAAGTGATGGCAAAATATGGTTTGAAAAGGGTTGGAAGGAATTTGCAAAATATCATTCTCCAGCTCATGGCCATCTTCTCCTTTTCGACAATACGCATACGTATTAG 288 0.3542 MASEFPEVKQFHFLKIILTQTLHQGKLMIPVKFVEKYGEGLPNTIYFKTPNGAKWELNLVKSDGKIWFEKGWKEFAKYHSPAHGHLLLFDNTHTY* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2514 95 Gene3D - 5 94 IPR015300 -
Tpr6g2514 95 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 89 - -
Tpr6g2514 95 SUPERFAMILY DNA-binding pseudobarrel domain 9 89 IPR015300 -
Tpr6g2514 95 CDD B3_DNA 11 89 IPR003340 GO:0003677
Tpr6g2514 95 ProSiteProfiles B3 DNA-binding domain profile. 12 95 IPR003340 GO:0003677
Tpr6g2514 95 PANTHER B3 DOMAIN-CONTAINING 7 89 - -
Tpr6g2514 95 SMART B3_2 13 92 IPR003340 GO:0003677
Tpr6g2514 95 Pfam B3 DNA binding domain 20 90 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2514 Tpr-Chr6 27510943 27516504 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2514 13 89 B3 DNA Binding Superfamily AT3G18990 38.961 6.77e-16 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr6g2514 B3 1.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2514 - - mtr:MTR_7g050580 145.206