Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2513 ATGGCTAATGAATCTCCTCATGTGAAGCCAACCCATTTTTTCAAGATCATATGTGATCAAAACCTTCATGAGGGAAAGCTTATGATGCCAAGAAAGTTTGTGGAAAAATATGGAGAAGGCTTAACAAAAATTATATGTTTAAAGACTCCAAATGGTGAAAAATGGAAAATAAATTTGGTAAAAAGTGATGGTAAAATATGGTTTGAAAAGGGTTGGAAAGAATTTGTAGAGTATCATTCTCTAGCTCATGGACATCTTGTAGTTTTCAAATATGAAAAAATTTCCCATTTTGAGGTACAAATATTTGATAAGAGTGCATTTGAGATAAAATACCCTTTGAAAAGATTTGATGCTAAAAGGGTATATAATGGTCAAAAGAGGAAAGCTAACTTAGAATTTCATCAACCATGTGAAATTGGAAGTAGCAGTGGTGTTAAAGTTGAGAAATTGCAAAAGGTAGCAGCTATGAATCATATTGATAAAAAGTGTGAAGGAGAGCAATTTGTTATTGCTAAGAAAGTTAAAGCCCTTGACAGAGCAACTTCTTTCAGAACTTGTAATCCATCCTTTTATGTTGTCATGAATCCATCATACATGCATGGTCCTTGTAATCTGCATATACCAAGTGAGTTTGGCAAAAGACACTTATTAGATTTAGACAATAAGCAGGGAGATATTCATCTTAGGCTATTAAATGGGAAAGTTTGGTCAGCAAAGTACCTAATTAGGATAGCCAATGGATTAGAAAGATATGAAATGTACTCAAGTGGATGGAAGGAATTTGCAAAGGACAACAACTTGAAAGTTGGTGATGCTTGCACCTTTGAGCTCTTACCTACTAGCTCTATAGTTACCTTCATTGTTCACATCTTTAAGGATTAA 882 0.3379 MANESPHVKPTHFFKIICDQNLHEGKLMMPRKFVEKYGEGLTKIICLKTPNGEKWKINLVKSDGKIWFEKGWKEFVEYHSLAHGHLVVFKYEKISHFEVQIFDKSAFEIKYPLKRFDAKRVYNGQKRKANLEFHQPCEIGSSSGVKVEKLQKVAAMNHIDKKCEGEQFVIAKKVKALDRATSFRTCNPSFYVVMNPSYMHGPCNLHIPSEFGKRHLLDLDNKQGDIHLRLLNGKVWSAKYLIRIANGLERYEMYSSGWKEFAKDNNLKVGDACTFELLPTSSIVTFIVHIFKD* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2513 293 CDD B3_DNA 188 292 IPR003340 GO:0003677
Tpr6g2513 293 CDD B3_DNA 12 103 IPR003340 GO:0003677
Tpr6g2513 293 Gene3D - 6 106 IPR015300 -
Tpr6g2513 293 PANTHER B3 DOMAIN-CONTAINING 6 292 - -
Tpr6g2513 293 SMART B3_2 13 105 IPR003340 GO:0003677
Tpr6g2513 293 SMART B3_2 190 290 IPR003340 GO:0003677
Tpr6g2513 293 Pfam B3 DNA binding domain 19 104 IPR003340 GO:0003677
Tpr6g2513 293 Pfam B3 DNA binding domain 190 292 IPR003340 GO:0003677
Tpr6g2513 293 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 292 - -
Tpr6g2513 293 ProSiteProfiles B3 DNA-binding domain profile. 190 293 IPR003340 GO:0003677
Tpr6g2513 293 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Tpr6g2513 293 SUPERFAMILY DNA-binding pseudobarrel domain 184 292 IPR015300 -
Tpr6g2513 293 Gene3D - 169 293 IPR015300 -
Tpr6g2513 293 SUPERFAMILY DNA-binding pseudobarrel domain 10 112 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2513 Tpr-Chr6 27507119 27509996 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2513 10 284 B3 DNA Binding Superfamily AT3G18990 25.664 4.39e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr6g2513 B3 4e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2513 - - lja:Lj1g3v3690290.1 336.65