Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2510 ATGTCGGCAGCGTCGCCGTCTCCGGCACCACCGCAACTACCTTCTAATACCACTCGTCCGCCTTCCTCATCTACTGCTCCGTCGCCTAACAGTTCAACTTCACCTCCACCACCGCAGCAACCACCCTCTTCCTCTTCACCTCCTCCGGCTGCTCCTCCTCCAGCTGTGCCGTCGTCTCCTCGGCCTTCACCTCCATCGCCGCCTCCTGTAGCTCCTACTCCAACCCCGCCAACACGCCCTCCTCCATCGCCCCAATCGCCACCACCATCTTCACCAGCTCGTCCCTCACCGCCACCGCAATCACCCGTTCCTCCAAGAAGCTCTCCTCCGCCTTCACCACCAGTAGCACCGTCGCCACTACCATCTTCTCCACCTCGTCGCTCACCACCACCACCACAATCAAGAAGCCCTCCCCCGCCTTCACCACCAATTGCACCTTCAAATCCACCCCAATCATCTCCACCGGAAAATTCACCCCCTTCTCCCACCGTGACACCACCCAGACCTTCACCTCCACCATCCCCCAATAACTCATCTCAAACTCCACCACCAGCATCATCACCGCCGTCACCATTACCGGCACCATCACCATCACCATCACCATCATCAACCAGCCCTCCTGCAAGACCTAGTTCACCACCACCTCGGCCTTCAAATTCAACACCAAGGGTATCACCTCCATCACCCTCAATCATTCATTTGTCGCCGCCTCCGCCACCACAGAATGGACCAGAACAATCAAGCCCTGAATCCGGAAGCAGCAGTGGTGGAATTGGTTCTGGTGCTGTAGTGGCTATAGCTGTATTTGGTGGAATTCTATTGCTTGGCTTCATTGGAGTTGCTATATGGTGTTTGAGGAGGCAAAAGAAAAGGGATTCTCCTCATGATGGTTATGTCATGCCTTTCACTCTTCCCTCCTCAACTGAATCAGATTCATCCTTTTTAAAGATACACGCTGCCTCTGATCCTCTTGTAAGAAGTGGATCTAGCAGTGATGTTGTGCATACACCATCTGACCCTGGTGGTGGTGGAATGGGCCACTCAAGGAACTGGTTTTCATATGAAGAACTAATCAAGGCCACAAATGGTTTCTCAACTATGAATCTTTTGGGAGAAGGTGGATTTGGTTCTGTGTATAAAGGATGTTTACCTGATGGCAGAGAGATAGCGGTGAAGCAGCTCAAAATTGGTGGGAGTCAAGGGGAGAGAGAATTCAAAGCTGAAGTCGACATAATTAGTCGCATACATCATCGCCATTTGGTTTCTTTAGTTGGACACTGCATTCAAGATAACAGAAAAATACTTGTCTATGACTATGTCCCTAACAACACACTTCATTTTCATCTACATGAGGGAGGTCAACCTGTGCTGGAATGGGAAAAACGTGTTAAAATCGCAGCTGGTGCAGCTCGAGGAATAGCTTATCTCCATGAAGACTGCAATCCTCGGATTATTCACAGAGATATCAAGCCATCAAACATTCTTTTGGATTACAACTATGAAGCTCAGGTCTCAGATTTTGGCCTAGCGAAATTAGCTCTAGATGCAAATACACATGTAACGACGCGCGTCATGGGAACTTTTGGGTACGTTGCCCCTGAATACGCGTCAAGTGGAAAATTGACCGACAAGTCTGATGTATATTCTTTTGGAGTTGTGCTTTTGGAGCTCATTACCGGACGGATGCCAGTAGATCCATCACAAATGAGCGATGAGAGTCTAGTTGAATGGGCTCGACCTTTGCTAAGTGATGCACTTGAAACTGGGGAATTTGAGAGTTTCATAGATCCAAAGCTAGGAAAGAACTACATTGATAGTGAAATGTTTTGCATGATTGAAGTTGCTGCTGCTTGTGTTCGGCATTCAGCTTCTAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTCGAAAGCTTAGCAACTTCAGATCTAACGAACGGAATGCGAGTTGGTGAAAGCCAGGCATTTGACTCTGCACAACAATCTGAAGAAATAAGATTGTTTCGAAGGATGGCATTTGGTAGTCAAAATTATAGCACAGACTATTTTAATCACTCTAGTTTGCGTTTGTAA 2073 0.4834 MSAASPSPAPPQLPSNTTRPPSSSTAPSPNSSTSPPPPQQPPSSSSPPPAAPPPAVPSSPRPSPPSPPPVAPTPTPPTRPPPSPQSPPPSSPARPSPPPQSPVPPRSSPPPSPPVAPSPLPSSPPRRSPPPPQSRSPPPPSPPIAPSNPPQSSPPENSPPSPTVTPPRPSPPPSPNNSSQTPPPASSPPSPLPAPSPSPSPSSTSPPARPSSPPPRPSNSTPRVSPPSPSIIHLSPPPPPQNGPEQSSPESGSSSGGIGSGAVVAIAVFGGILLLGFIGVAIWCLRRQKKRDSPHDGYVMPFTLPSSTESDSSFLKIHAASDPLVRSGSSSDVVHTPSDPGGGGMGHSRNWFSYEELIKATNGFSTMNLLGEGGFGSVYKGCLPDGREIAVKQLKIGGSQGEREFKAEVDIISRIHHRHLVSLVGHCIQDNRKILVYDYVPNNTLHFHLHEGGQPVLEWEKRVKIAAGAARGIAYLHEDCNPRIIHRDIKPSNILLDYNYEAQVSDFGLAKLALDANTHVTTRVMGTFGYVAPEYASSGKLTDKSDVYSFGVVLLELITGRMPVDPSQMSDESLVEWARPLLSDALETGEFESFIDPKLGKNYIDSEMFCMIEVAAACVRHSASKRPRMGQVVRAFESLATSDLTNGMRVGESQAFDSAQQSEEIRLFRRMAFGSQNYSTDYFNHSSLRL* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2510 690 SMART serkin_6 364 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2510 690 SUPERFAMILY Protein kinase-like (PK-like) 347 635 IPR011009 -
Tpr6g2510 690 MobiDBLite consensus disorder prediction 1 228 - -
Tpr6g2510 690 Gene3D Transferase(Phosphotransferase) domain 1 440 658 - -
Tpr6g2510 690 MobiDBLite consensus disorder prediction 237 256 - -
Tpr6g2510 690 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 69 685 - -
Tpr6g2510 690 PANTHER BNACNNG34790D PROTEIN 69 685 - -
Tpr6g2510 690 MobiDBLite consensus disorder prediction 30 228 - -
Tpr6g2510 690 Pfam Protein kinase domain 365 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2510 690 CDD STKc_IRAK 370 639 - -
Tpr6g2510 690 Gene3D Phosphorylase Kinase; domain 1 344 439 - -
Tpr6g2510 690 ProSitePatterns Protein kinases ATP-binding region signature. 370 392 IPR017441 GO:0005524
Tpr6g2510 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Tpr6g2510 690 ProSiteProfiles Protein kinase domain profile. 364 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2510 Tpr-Chr6 27483204 27488464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2510 65 682 Trihelix Transcription Factor Family AT1G70460 46.177 1.99e-157 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Tpr6g2510 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2510 - - mtr:MTR_0194s0030 788.104