Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2507 ATGGCTACACAACAGTCTTTGCTAGACAAGCCTAGAAAATCCATTCCCAAAACATTTTGGTTAATCATCTCTTTGATTGCCATCATAAGCTCATCAGCACTTATTTTTTCTCATCTCAACAAACCAATCTCCTTCTTCAACCTCTCCTCAGCTCCCAATCCGTGTGAGCATGCTATTGATACAAAATCATGCTTAAGTCATGTATCAGAAGTGGTTCAAGGTTCAACCTTGGCCAACGACCACAAATTGAGTACACTCATATCCTTATTAACCAAGTCCACCACACACATTCAAAAAGCCATGGATACGGCTAATGTTATCAAACGCCGAATTAACAGTCGTAGAGAAGAAGTTGCTTTGAATGACTGTGAACAACTAATGGACTTGTCCATGAATAGAGTTTGGGACTCGGTGTTGACTCTAACTAAAGATAACACTGACTCACAGAAAGATGCACACACATGGCTCAGTAGTGTACTCACTAACCATGCAACTTGCTTGGATGGATTAGAAGGTACATCTCGGGCGGTTATGGAAAGTGATCTTCAGGACTTGATATCCAGGGCTAGATCTTCGCTTGCTGTGCTTGTTTCTGTTTTACCTCCAAAGGATCACGACGAATTCATTGATGAATCATTAAATGGGGAATTTCCTTCTTGGGTAACAAGTAAGGATAGAAGGCTTTTGGAGTCTTCAGTTGGGGACGTAAAGGCCAATGTTGTGGTGGCTAAAGATGGGAGCGGCAAGTTCAAGACTGTGGTCGAGGCTGTGGCATCTGCACCAGACAATGGTAAGACAAGGTATGTTATCTATGTGAAAAGGGGAATCTACAAAGAGAAAGTAGATATCAGTAGTAAAAAGACGAATGTGATGCTTGTCGGTGATGGTATGGATGCAACGATAATCACAGGCAGCTTAAATGTCGTCGATGGAACAGGCACCTTCCAAAGTGCTACAGTTGCTGCTGTTGGAGATGGGTTTATAGCTCAGGACATTGGATTCCAAAACACGGCAGGCCCAGAAAAGCACCAGGCAGTTGCTCTCCGCGTTGGCTCTGATCAATCTGTCATCAACCGCTGCAAAATTGACGCATTTCAAGACACTCTCTACACACACTCCAACCGACAATTTTACCGTGACTCCTTCATTACCGGTACCGTTGACTTCATCTTTGGAGACGCAGCTGTTGTGTTCCAGAAGAGCAAACTTGTGGCCCGAAAGCCTTTGAGCAACCAAAACAACATGGTCACAGCCCAAGGTCGACTAGATCCAAACCAGAACACCGCAACTTCAATTCAACAATGTGACATAATACCAAGCTCAGACCTCAAACCTGTGGTAGGCTCTATTAAAACATACCTAGGCCGCCCATGGAAGAAATACTCCAGGACCGTTGTGCTGCAGTCCGTCGTGGATAGCCACATTGACCCTGCAGGATGGGCTGAATGGGATGCTGCTAGTAAAGACTTTCTGCAAACATTGTATTACGGAGAGTACATGAACAGCGGAGCAGGTGCTGGTACCGGCAAGAGAGTGACTTGGCCTGGTTATCATATTATCAAAACTGCTGCAGAGGCTAGCAAGTTTACAGTAGCACAACTCATCCAAGGTAATGTTTGGTTGAAGAACACAGGAGTAGCCTTCATTGAAGGCTTGTAG 1659 0.4461 MATQQSLLDKPRKSIPKTFWLIISLIAIISSSALIFSHLNKPISFFNLSSAPNPCEHAIDTKSCLSHVSEVVQGSTLANDHKLSTLISLLTKSTTHIQKAMDTANVIKRRINSRREEVALNDCEQLMDLSMNRVWDSVLTLTKDNTDSQKDAHTWLSSVLTNHATCLDGLEGTSRAVMESDLQDLISRARSSLAVLVSVLPPKDHDEFIDESLNGEFPSWVTSKDRRLLESSVGDVKANVVVAKDGSGKFKTVVEAVASAPDNGKTRYVIYVKRGIYKEKVDISSKKTNVMLVGDGMDATIITGSLNVVDGTGTFQSATVAAVGDGFIAQDIGFQNTAGPEKHQAVALRVGSDQSVINRCKIDAFQDTLYTHSNRQFYRDSFITGTVDFIFGDAAVVFQKSKLVARKPLSNQNNMVTAQGRLDPNQNTATSIQQCDIIPSSDLKPVVGSIKTYLGRPWKKYSRTVVLQSVVDSHIDPAGWAEWDAASKDFLQTLYYGEYMNSGAGAGTGKRVTWPGYHIIKTAAEASKFTVAQLIQGNVWLKNTGVAFIEGL* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2507 552 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 200 IPR035513 -
Tpr6g2507 552 CDD PMEI-like_4 57 199 - -
Tpr6g2507 552 Pfam Plant invertase/pectin methylesterase inhibitor 55 195 IPR006501 GO:0004857
Tpr6g2507 552 PANTHER PECTINESTERASE 21 550 - -
Tpr6g2507 552 PANTHER PECTINESTERASE 21 550 - -
Tpr6g2507 552 Gene3D - 233 552 IPR012334 -
Tpr6g2507 552 ProSitePatterns Pectinesterase signature 1. 264 283 IPR018040 -
Tpr6g2507 552 SUPERFAMILY Pectin lyase-like 237 551 IPR011050 -
Tpr6g2507 552 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 177 IPR035513 -
Tpr6g2507 552 SMART PMEI_2 46 195 IPR006501 GO:0004857
Tpr6g2507 552 Pfam Pectinesterase 239 538 IPR000070 GO:0030599|GO:0042545
Tpr6g2507 552 ProSitePatterns Pectinesterase signature 2. 383 392 IPR033131 -
Tpr6g2507 552 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 180 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2507 Tpr-Chr6 27457893 27461727 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2507 3 552 Carbohydrate Esterase AT1G11580 55.437 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2507 K01051 - gmx:100815836 833.943