Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2506 ATGGCTACCAATGTATCTTTGCTAGAAAAGCCTAGAAAATCAATTCCAAAAACATTTTGGTTAATCATCACTTTAATTGCTATCATAAGCTCATCAGCCCTTATTTTTTCTCATCTCAACAAACCAATATCCTTCAACCTCTCCTCAGCTCCCAATCTGTGTGATCATGCTATTGATACAAAATCATGCTTAACTCATGTATCAGAAGTGGTTCAAGGTTCAACCTTGGCCAACACAAAAGACCACAAATTGAGCACACTCATATCTTTATTAACCAAGTCTACCACACACATTCAAAAAGCCATGGACACGGCCAATGTTATCAAACGCCGAATTAACAACCGTAGAGAGGAAATGGCTTTGAATGACTGTGAGCAACTAATGGACTTGTCCATGGATAGAATTTGGGACTCAGTGTTGACTCTAACAAAAGATAACACTGACTCACAGCAAGATGCACACATGTGGCTAAGTAGTGTGCTCACTAATCATGCAACTTGTTTGGATGGTTTAGAAGGTACATCTCGGGTTGTAATGGAAAGTGATCTTCAGGACTTGATATCCAGGGCTAGATCTTCTCTTGCCGTGCTAGTTGCCGCTTTACCTCGAAAGGATCACAGCGGATTCATTGATGAATCGCTTAATGGGGATTTTCCCTCGTGGGTAACAAGCAAGGATCGAAGGCTTTTGGAATCTTCAGTTGGGGACATAAAGGCCAATGTTGTGGTGGCTAAGGATGGGAGCGGCAAGTTCAAGACAGTAGCTGAGGCTGTGGCATCTGCACCGGACAACGGTAAGGCAAGGTACGTTATCTATGTGAAAAAGGGAATCTACAAAGAGAATGTAGAAATTGGTAAGAAAAAGACGAATGTGATGCTTGTTGGTGATGGTATGGATGCAACAATAATCACAGGCAGCTTAAATTTCATTGATGGAACAACCACCTTCAAAAGTGCAACTGTTGCTGCTGTTGGAGATGGGTTTATAGCTCAGGACATTAGGTTCCAAAACACGGCAGGCCCAGAGAAGCACCAGGCAGTTGCTCTTCGCGTTGGCGCTGATCAATCCGTGATCAACCGCTGCAAAATTGATGCATTTCAAGACACGCTCTATGCACACTCCAACCGGCAATTTTACCGTGACTCCTACATTACTGGTACCGTTGACTTCATCTTTGGAAATGCAGCAGTTGTGTTCCAGAAGAGCAATCTCGTGGCCCGAAAGCCCATGAGCAATCAAAAAAACATGGTCACAGCCCAAGGTCGAGAAGACCCAAACCAGAACACTGCAACTTCAATTCAGCAATGTAACATAATACCAAGCTCAGACCTCAAGCCTGTGCAAGGAACCATAAAAACATACCTCGGCCGCCCATGGAAGAAATACTCCAGAACAGTTGTGCTGCAATCCGTCGTGGACAGCCATATTGACCCGGCAGGATGGGCTGAATGGGATGCCGCAAGCAAGGACTTTCTCAAAACATTGTATTACGGAGAGTACTTGAACAGTGGAGCTGGTGCTGGTACCAGCAAGAGAGTGACTTGGCCTGGCTATCATATCATCAAAACTGCTGCAGAGGCTAGCAAGTTTACCGTAGCACAACTCATCCAAGGAAATGTTTGGTTAAAGAATACAGGAGTGGCCTTCATCGAAGGTCTGTAG 1662 0.444 MATNVSLLEKPRKSIPKTFWLIITLIAIISSSALIFSHLNKPISFNLSSAPNLCDHAIDTKSCLTHVSEVVQGSTLANTKDHKLSTLISLLTKSTTHIQKAMDTANVIKRRINNRREEMALNDCEQLMDLSMDRIWDSVLTLTKDNTDSQQDAHMWLSSVLTNHATCLDGLEGTSRVVMESDLQDLISRARSSLAVLVAALPRKDHSGFIDESLNGDFPSWVTSKDRRLLESSVGDIKANVVVAKDGSGKFKTVAEAVASAPDNGKARYVIYVKKGIYKENVEIGKKKTNVMLVGDGMDATIITGSLNFIDGTTTFKSATVAAVGDGFIAQDIRFQNTAGPEKHQAVALRVGADQSVINRCKIDAFQDTLYAHSNRQFYRDSYITGTVDFIFGNAAVVFQKSNLVARKPMSNQKNMVTAQGREDPNQNTATSIQQCNIIPSSDLKPVQGTIKTYLGRPWKKYSRTVVLQSVVDSHIDPAGWAEWDAASKDFLKTLYYGEYLNSGAGAGTSKRVTWPGYHIIKTAAEASKFTVAQLIQGNVWLKNTGVAFIEGL* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2506 553 ProSitePatterns Pectinesterase signature 1. 265 284 IPR018040 -
Tpr6g2506 553 PANTHER PECTINESTERASE 20 551 - -
Tpr6g2506 553 SMART PMEI_2 45 196 IPR006501 GO:0004857
Tpr6g2506 553 Gene3D - 234 553 IPR012334 -
Tpr6g2506 553 Pfam Pectinesterase 240 539 IPR000070 GO:0030599|GO:0042545
Tpr6g2506 553 TIGRFAM PME_inhib: pectinesterase inhibitor domain 23 180 IPR006501 GO:0004857
Tpr6g2506 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 200 IPR035513 -
Tpr6g2506 553 PANTHER PECTINESTERASE 20 551 - -
Tpr6g2506 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 177 IPR035513 -
Tpr6g2506 553 SUPERFAMILY Pectin lyase-like 238 552 IPR011050 -
Tpr6g2506 553 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Tpr6g2506 553 Pfam Plant invertase/pectin methylesterase inhibitor 52 184 IPR006501 GO:0004857
Tpr6g2506 553 CDD PMEI-like_4 56 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2506 Tpr-Chr6 27452618 27454872 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2506 3 553 Carbohydrate Esterase AT1G11580 56.007 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2506 K01051 - gmx:100815836 837.795