Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2505 ATGGCCACCCAAGAAACATTGCTAGAAAAGTCTAGAAAATCCATTTCTAAAACATTTTGGTTAATCCTCTCTTTAGCTGCTATCATAAGCTCATCAGCCCTCTCCTCAGCTCCCAATGTGTGTGAACATGCACTTGATACCAAATCCTGCTTAACTCATGTATCAGAAGCAGTTCAAGGTTCAACCATGGCCAACACAAAAGACCACAAATTGAGTACACTCATATCATTATTAACCAAGTCCACCACACACATTCAGAAAGCCATGGACACGGCCAATGTTATCAAACGCCGAATTAACAGTCCTAGGGAAGAAAGTGCTTTGAATGACTGTGAACAACTTATGGACTTGTCCATGGACAGAGTTTGGGACTCAGTGTTGACTCTAACAAGAGATAACACTGACTCACAAAAACATGCTCACACATGGCTCAGTAGTGTACTCACTAACCATGCAACTTGTTTGGATGGATTAGAAGGTACATCTCGGGTCCTTATGGAAAGTGACGTTCAGGACTTGATATCCAGGGCTAGATCTTCTCTTGCCGTACTTGTTGCCATTTTACCTCGAAAGGATCACGACGAATTCATTGTTGAATCACTGAATGGGGACTTTCCATCTTGGGTAACAAGTAAGGATCGAAGGCTTTTGCAATCATCAGCTGCCAACATACAGGCCAATGCTGTGGTGGCTAAGGATGGGAGCGGCAAGTTCAATACTGTGACTGAGGCTGTGGCATCTGCACCTGACAATGGTAAGACAAGGTATGTTATCTATGTGAAAGCGGGAACCTACAAAGAGAAAGTAGACATCAGTAGTAGAAAGAAGAATGTGATGCTCGTGGGTGATGGTATGGATCAAACGATAATCACAGGCAGCTTAAATGCCATCGATGGAACGGGCACCTTCCAAAGTGCAACAGTTGCTGCTGTTGGAGATGGGTTTATAGCCCAGGACATTGGGTTCCAAAACAGTGCAGGCCCAGAGAAGCATCAGGCAGTTGCTCTCCGTGTCGGCTCTGATCAATCTGTCATCAACCGCTGCAAAATTGACGCATATCAAGACACTCTCTACGCACACTCCAACCGGCAATTTTACCGCGACTCCTTCATTACCGGTACCATTGACTTTATCTTTGGAGATGCAGCTGTTGTGCTCCAGAAGTGCAAACTCGTAGCCCGAAAGCCCATGAGCAACCAAAAAAACATGGTCACAGCCCAAGGCCGACTAGACCCAAACCAAAACACTGCAACTTCAATTCAGCAATGTGACGTCATACCAAGCACTGACCTCAAACCTGTGATAGGCTCCATCAAAACTTACCTAGGCCGCCCATGGAAGAAATACTCCAGGACTGTTGTGTTGCAATCCTCGATAGGTAACCACATCGATCCAACAGGATGGGCTGAATGGAATAATGAAAGTAAGGATTTTCTCGAAACATTGTATTACGGAGAGTACAGGAACAGTGGTCCCGGTGCTGGTACTAGCAAGAGAGTGAACTGGTCTGGTTATCATATCATCACAAGTGCTGAAGAGGCAAGCAAGTTTACAGTAACAGAGCTCATCCAAGGTAATGTTTGGTTGAAGAACACAGGGGTGGCCTTCATCGAAGGCCTGTAG 1623 0.4535 MATQETLLEKSRKSISKTFWLILSLAAIISSSALSSAPNVCEHALDTKSCLTHVSEAVQGSTMANTKDHKLSTLISLLTKSTTHIQKAMDTANVIKRRINSPREESALNDCEQLMDLSMDRVWDSVLTLTRDNTDSQKHAHTWLSSVLTNHATCLDGLEGTSRVLMESDVQDLISRARSSLAVLVAILPRKDHDEFIVESLNGDFPSWVTSKDRRLLQSSAANIQANAVVAKDGSGKFNTVTEAVASAPDNGKTRYVIYVKAGTYKEKVDISSRKKNVMLVGDGMDQTIITGSLNAIDGTGTFQSATVAAVGDGFIAQDIGFQNSAGPEKHQAVALRVGSDQSVINRCKIDAYQDTLYAHSNRQFYRDSFITGTIDFIFGDAAVVLQKCKLVARKPMSNQKNMVTAQGRLDPNQNTATSIQQCDVIPSTDLKPVIGSIKTYLGRPWKKYSRTVVLQSSIGNHIDPTGWAEWNNESKDFLETLYYGEYRNSGPGAGTSKRVNWSGYHIITSAEEASKFTVTELIQGNVWLKNTGVAFIEGL* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2505 540 SUPERFAMILY Pectin lyase-like 224 539 IPR011050 -
Tpr6g2505 540 SMART PMEI_2 32 183 IPR006501 GO:0004857
Tpr6g2505 540 ProSitePatterns Pectinesterase signature 2. 371 380 IPR033131 -
Tpr6g2505 540 Pfam Pectinesterase 227 526 IPR000070 GO:0030599|GO:0042545
Tpr6g2505 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 164 IPR035513 -
Tpr6g2505 540 TIGRFAM PME_inhib: pectinesterase inhibitor domain 19 168 IPR006501 GO:0004857
Tpr6g2505 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 189 IPR035513 -
Tpr6g2505 540 PANTHER PECTINESTERASE 26 538 - -
Tpr6g2505 540 Gene3D - 220 540 IPR012334 -
Tpr6g2505 540 PANTHER PECTINESTERASE 26 538 - -
Tpr6g2505 540 CDD PMEI-like_4 43 187 - -
Tpr6g2505 540 Pfam Plant invertase/pectin methylesterase inhibitor 39 172 IPR006501 GO:0004857
Tpr6g2505 540 ProSitePatterns Pectinesterase signature 1. 252 271 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2505 Tpr-Chr6 27438636 27440563 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2505 3 540 Carbohydrate Esterase AT1G11580 53.025 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2505 K01051 - gmx:100815836 778.859