Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2504 ATGGCTACCAATGAATCTTTGCTAGAAAAGCCTAGAAAATCTATTCCCAAAACATTTTGGTTAGTCCTCTCTTTGGTTGCTATCATAAGCTCATCAGCACTTATTGTTTCTCATCTCAACAAACCAAACTTTCACCTGTCCTCAGCTCCCAATCTGTGTGAACATGCACTTGATACAAAATCCTGCTTAACTCGTGTATCAGAAGTAATTCAAGTTACAACTTACAATACAAAAGACCAAAAATTGCACGTACTATTGTCCTTATTAACCAAGTCCACCACACACATTCAAAAAGCAATGAACACGGCTAACGCTATTAAACGCCGAATTAATAGTCCTAGAGAAGAAATTGCTTTGAATGACTGTGAACAACTAATGGACTTGTCCATGGACAGAATTTGGGACTCGGTGTTCGCCATGACAAAAAGTAATATTGACTCGGATAAAGATGCACATACATGGTTAAGTAGTGTGCTCACTAATCATGCAACTTGCTTGGATGGATTAGAAGGTATATCTTTGACTCTTATGGAAAATGACATTCAAGAAATGATATCTAGAGCTAGAACTTCTCTAGCTGTGTTTCTTGCTGTTTTTCCTCAAAAGGGTCACGACGAATTCGTTGATGAAACATTGAATGGTGAATTTCCATCTTGGGTTACAAGCAATGGTAGGAGTCTTTTGGAGTCTTCTGTTGGAGACATAAAGGCAAATGTTGTTGTGGCAACTGATGGGAGTGGCAAGTTTAAGACTGTGGCTGAGGGTGTAGCATCTGCACCTGATAATGGTAAGACAACATATGTTATCTATGTGAAAAAGGGAACTTACAAAGAGAATATTGAAATTGGTAAGAAAAAAACAAATGTGATGCTTGTTGGTGATGGTATGGATGCAACAATAATCACAGGCAACTTGAATTTCATTGATGGAACAACCACCTTCAAAAGTGCCACTGTTGCTGCGGTTGGGGATGGATTTATAGCACAAGACATTTGGTTCCAAAACACGGCAGGCCCAGAGAAGCACCAAGCAGTGGCTCTGCGTGTCGGCGCAGACCAATCTGTCATCAACCGTTGCCGCATTGACGCATTTCAAGACACTCTATATGCACACTCCAATAGACAATTTTACCGTGATTCCGTAATTACAGGTACAATTGACTTCATCTTTGGAAACGCAGCTGTTGTTTTCCAGAAGTGTAAGTTAGTGGCTCGAAAGCCTCTATCCAACCAAAACAACATGTTCACAGCTCAAGGCCGAGAAGATCCAGCTCAAAACACAGGAACTTCAATTCAACAATGTGACCTAACACCAAGTGATGACCTTAAGCCTGTTGTTGGCTCCATCAAAACATTCCTTGGCCGCCCATGGAAGAAATACTCCAGAACTGTTGTATTGCAATCATTTCTGGACAGCCACATTGACCCAACAGGATGGGCTGAATGGGATGCCACAAGTAAGGACTTTTTGCAAACGTTGTACTACGGAGAGTACATTAACAATGGACCAGGTGCTGGTACTGGTAAGAGAGTGAACTGGCCAGGTTATCATATCATCACAAGCGCAACGGAGGCTAGCAAGTTTACAGTAGCACAGCTAATCCAAGGTAATGTTTGGTTGAAGAACTCAGGGGTGGCCTTCACTGAGGGATTGTAA 1656 0.4155 MATNESLLEKPRKSIPKTFWLVLSLVAIISSSALIVSHLNKPNFHLSSAPNLCEHALDTKSCLTRVSEVIQVTTYNTKDQKLHVLLSLLTKSTTHIQKAMNTANAIKRRINSPREEIALNDCEQLMDLSMDRIWDSVFAMTKSNIDSDKDAHTWLSSVLTNHATCLDGLEGISLTLMENDIQEMISRARTSLAVFLAVFPQKGHDEFVDETLNGEFPSWVTSNGRSLLESSVGDIKANVVVATDGSGKFKTVAEGVASAPDNGKTTYVIYVKKGTYKENIEIGKKKTNVMLVGDGMDATIITGNLNFIDGTTTFKSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSVINRCRIDAFQDTLYAHSNRQFYRDSVITGTIDFIFGNAAVVFQKCKLVARKPLSNQNNMFTAQGREDPAQNTGTSIQQCDLTPSDDLKPVVGSIKTFLGRPWKKYSRTVVLQSFLDSHIDPTGWAEWDATSKDFLQTLYYGEYINNGPGAGTGKRVNWPGYHIITSATEASKFTVAQLIQGNVWLKNSGVAFTEGL* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2504 551 SMART PMEI_2 44 194 IPR006501 GO:0004857
Tpr6g2504 551 CDD PMEI-like_4 55 198 - -
Tpr6g2504 551 PANTHER PECTINESTERASE 20 549 - -
Tpr6g2504 551 ProSitePatterns Pectinesterase signature 1. 263 282 IPR018040 -
Tpr6g2504 551 TIGRFAM PME_inhib: pectinesterase inhibitor domain 22 180 IPR006501 GO:0004857
Tpr6g2504 551 Pfam Plant invertase/pectin methylesterase inhibitor 51 185 IPR006501 GO:0004857
Tpr6g2504 551 Gene3D - 232 551 IPR012334 -
Tpr6g2504 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 199 IPR035513 -
Tpr6g2504 551 ProSitePatterns Pectinesterase signature 2. 382 391 IPR033131 -
Tpr6g2504 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 186 IPR035513 -
Tpr6g2504 551 Pfam Pectinesterase 238 537 IPR000070 GO:0030599|GO:0042545
Tpr6g2504 551 PANTHER PECTINESTERASE 20 549 - -
Tpr6g2504 551 SUPERFAMILY Pectin lyase-like 236 550 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2504 Tpr-Chr6 27432380 27434956 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2504 3 551 Carbohydrate Esterase AT1G11580 54.626 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2504 K01051 - gmx:100815836 839.336