Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2494 ATGGTCTACTTGTGCTTGGTCTTGCTTCACATTTTTTTTAGCATTGTTCAAATTCATTCAGCACCAAGAGAGTCCCTCATAACCAAGCTTCCTGGCTTCAGTGGTACTATACCTTCCAAGCACTATGCTGGGTATGTGACAGTGGATGAAAATCATGGAAGAAACTTGTATTACTATTTTGTTGAATCACAAGCTAATCCATCAAAAGACCCTGTGGTTCTATGGCTTAATGGTGGTCCTGCATGTTCTAGCTTTGATGGATTCATATATGAACATGGTCCTTTTAATTTTATTAAATCAAAGACTAAGGGAGCCTTGCCTACATTGCAACTAAATCCATACAGCTGGTCAAAGGTTTCTAATATTATATATTTGGACTCTCCTGCTGGAACTGGGTTTTCATATTCAAAGAATGTCTCTGATTATAAAACTGGAGATATAAAGACTGCTTCTGATACTCATACTTTTCTACTCAAATGGTTTGAATTATACCCTGAGTTCCTTGCCAATCCATTATTCATTGCTGGAGAGTCTTATGCTGGAGTTTATGTGCCTACTCTAGCTGATAAAATAGTGCAAGGAATTGAAGCTGGTACTAAGCCCAAATTGAATTTTAAGGGTTATATGGTTGGAAATCCAGTTACTGATGATATATTTGATGGCAATGCTCTTGTTCCTTTTGCACATGGAATGGGTCTTATCTCTGATCAAATATTTGAGGATGTAACAAAAGATTGTAGGGGGAAATTTTATGAGTCAGACAGTCTTGATTGTTCGCATCAGCTGTCAAAAGTTGATAAGGTACTAAATAAAGTAAACGTATATGACATTTTGGAACCATGTTATCATGGTGGAGAGAAAGAGGAGAATCAAAAATCAAATTCTAAATTGCCATTAAGCTTTAGGCAATTGGGTAAAACCGATAGACCTATTGCTGTGAGGAAAAGAATGTATGGTCGTGCTTGGCCCTACAAAATTTCTGTGAAAGATGGAATTGTACCAACTTGGCCACAACTTACAAGCAACAATATCTATACTCCTTGCACGGATGATGAGGTTTCTGTTATATGGCTGAATAATCGCGACGTCCGAAAAGCTATTCACACTGTGGAGGAAAGTGTGGTGGAGGAATGGGTCTTATGTACTGGCGACGAAGTTACATACACTCATGATACCGGGAGCATGATTCCGTACCACAAAAACCTAACTTCCAAAGGTTATCGCGCATTAGTATACAGTGGTGATCATGACATGTGTGTCCCATATACTGGAACTGAAGCATGGACAAGATCAATTGGATATAAAATTGTTGATGAATGGAGGTCTTGGTCAGTCAATGATCAAGTTGCTGGGTTTATACAAGGCTATGCCAACAATTTCACATTTCTAACAGTAAAGGGGTCTGGGCATACTGTTCCAGAATATAAGCCACAGGAAGCATTGTATTTTTACCAACATTTTATAAATGGGTTGCCTATATAA 1482 0.3819 MVYLCLVLLHIFFSIVQIHSAPRESLITKLPGFSGTIPSKHYAGYVTVDENHGRNLYYYFVESQANPSKDPVVLWLNGGPACSSFDGFIYEHGPFNFIKSKTKGALPTLQLNPYSWSKVSNIIYLDSPAGTGFSYSKNVSDYKTGDIKTASDTHTFLLKWFELYPEFLANPLFIAGESYAGVYVPTLADKIVQGIEAGTKPKLNFKGYMVGNPVTDDIFDGNALVPFAHGMGLISDQIFEDVTKDCRGKFYESDSLDCSHQLSKVDKVLNKVNVYDILEPCYHGGEKEENQKSNSKLPLSFRQLGKTDRPIAVRKRMYGRAWPYKISVKDGIVPTWPQLTSNNIYTPCTDDEVSVIWLNNRDVRKAIHTVEESVVEEWVLCTGDEVTYTHDTGSMIPYHKNLTSKGYRALVYSGDHDMCVPYTGTEAWTRSIGYKIVDEWRSWSVNDQVAGFIQGYANNFTFLTVKGSGHTVPEYKPQEALYFYQHFINGLPI* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2494 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Tpr6g2494 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Tpr6g2494 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Tpr6g2494 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 460 473 IPR001563 GO:0004185|GO:0006508
Tpr6g2494 493 Gene3D alpha/beta hydrolase 19 304 IPR029058 -
Tpr6g2494 493 ProSitePatterns Serine carboxypeptidases, histidine active site. 460 477 IPR033124 GO:0004185
Tpr6g2494 493 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 13 490 IPR001563 GO:0004185|GO:0006508
Tpr6g2494 493 Pfam Serine carboxypeptidase 31 490 IPR001563 GO:0004185|GO:0006508
Tpr6g2494 493 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 20 13 490 - -
Tpr6g2494 493 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Tpr6g2494 493 SUPERFAMILY alpha/beta-Hydrolases 27 492 IPR029058 -
Tpr6g2494 493 Gene3D - 344 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2494 Tpr-Chr6 27348851 27354550 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2494 353 493 Calmodulin-binding Proteins AT2G22960 44.681 9.27e-40 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2494 K16296 - gmx:100792057 761.911