Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2481 ATGGAGGCTATCAACAGTGGTGAAATTGAAACACAACAATATTTTGTCCCAATAAAAGTGAGTTCTAGAATGAAAAATCAGCCAAAGATTCATTATGATATTTACCATAAGAGTGGTAACAAGTTTGTTGACCAACAACATAATGAAAAGAGAGGTGTGAATTTTGAAGAGTATTCTATTGAGAAGAGAATAAAGATCGACCCCTTGATGCAAAATCAAACATTGGTTTCAAAAATAGATGAAAGTGGTTTATTTGTTTTTGATGAACTTGACATGAGGGGTATTTTGGCCTTAAAAGAAAACTTAAGACTTGCCAATCTTCGTAGTCTTGCTGAGAAAGAGAAGAATCAAATCAAGAATCAGCGAAAGAAGATGCGTAATAAAAAGAATGTTGACACATTTTTTATGACTAGCAAGGTTAATAAAAATGGCATTGATGGTGAGTACATTCCAGGACTCACAACATCAACATATCTAATCAATAAGCTTCAAGATTTGGCTAAAGTTGGTATAGATAAGGTTAATTTTATGAAAGGACAAGTCTCTGTAGCTCTTTCTTCTTCTCCAAGTTTGGTATGCAAGGATATTAGTGATGGACAAGAAGCTATCAACATAATTGTAACCAATGAATTCGATGATCCTCCGGTTGCACCTGCAGGTTTTACATATATTACATCAAATCAAGTTGCAAAACACGTTAAAGTTCCGTCTAGAACTTCTGGATGTCATTGCCAAAGAAGTTGCAGAAATATTAAAACGTGCTCTTGTGCTAATTATATTAAAGGCTCTAAATTTCCATACAGTAATAATGGCAGATTGATTGAGCCTCGAGACATCATTGTTGAATGTGGGCCACAATGCGGATGTGGACCTACTTGTGGAAATAAAATTTCCCAAAAGACATTGAAATATCGACTTGAAGTTTATCGTACAACCAAGAAAGGTTGGGCCGTAAGAACATGGGACTTTATCCCCTCAGGTGCACCAGTAATAGAGTATATTGGTGTACTTGATAGGGATGATATGTTAGATAATTCTATTGAAAATGATTACATATTTGATATTGATTGTTTACACACAATCAATGAGATAGATGGAAGAGAGCGACGGTTGGGTGGTGTATCACTCCCTACTAAAGAAATTTCTAAACAAAGCGACGAGTATATAAAAAAGGATCCGGAATTTTGTATAGATGCTGGTTCTTTTGGTAATGTTTCAAGATTTATCAATCATGGATGTACACCAAACCTCTTTGTACAATGTGTTCTAAGTAACCACCTAGATGTTAAACTAGCTCGTGTGATGTTATTTGCAGCAGAAGACATACCTCCCTATCAGGAACTCACCTATGACTATGGTTATAGACTTGATAGTGTGGTTGGTTCTGATGGAAATATTAAGCAAATGCAATGTCATTGTGGTTCAGAGGAATGTCGTAAGCGCTTGTACTAA 1452 0.3554 MEAINSGEIETQQYFVPIKVSSRMKNQPKIHYDIYHKSGNKFVDQQHNEKRGVNFEEYSIEKRIKIDPLMQNQTLVSKIDESGLFVFDELDMRGILALKENLRLANLRSLAEKEKNQIKNQRKKMRNKKNVDTFFMTSKVNKNGIDGEYIPGLTTSTYLINKLQDLAKVGIDKVNFMKGQVSVALSSSPSLVCKDISDGQEAINIIVTNEFDDPPVAPAGFTYITSNQVAKHVKVPSRTSGCHCQRSCRNIKTCSCANYIKGSKFPYSNNGRLIEPRDIIVECGPQCGCGPTCGNKISQKTLKYRLEVYRTTKKGWAVRTWDFIPSGAPVIEYIGVLDRDDMLDNSIENDYIFDIDCLHTINEIDGRERRLGGVSLPTKEISKQSDEYIKKDPEFCIDAGSFGNVSRFINHGCTPNLFVQCVLSNHLDVKLARVMLFAAEDIPPYQELTYDYGYRLDSVVGSDGNIKQMQCHCGSEECRKRLY* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2481 483 SMART PostSET_3 467 483 IPR003616 -
Tpr6g2481 483 Pfam Pre-SET motif 196 296 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr6g2481 483 Gene3D SET domain 186 483 IPR046341 -
Tpr6g2481 483 ProSiteProfiles SET domain profile. 304 453 IPR001214 GO:0005515
Tpr6g2481 483 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 98 482 - -
Tpr6g2481 483 ProSiteProfiles Pre-SET domain profile. 240 301 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr6g2481 483 ProSiteProfiles Post-SET domain profile. 467 483 IPR003616 -
Tpr6g2481 483 SMART preset_2 193 288 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr6g2481 483 SUPERFAMILY SET domain 188 459 IPR046341 -
Tpr6g2481 483 SMART set_7 304 459 IPR001214 GO:0005515
Tpr6g2481 483 Pfam SET domain 315 453 IPR001214 GO:0005515
Tpr6g2481 483 Coils Coil 104 131 - -
Tpr6g2481 483 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 98 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2481 Tpr-Chr6 27216675 27222084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2481 150 483 EF-hand Containing Proteins AT5G13960 52.819 5.02e-126 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr6g2481 SET 4.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2481 K11420 - mtr:MTR_7g052480 594.349