Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2461 ATGGAAAATCAATTCTTTTCAAACACAAATGTTTCTCAAAATCTTCAACCTTCTTCAATGCCTACATGGCAATCACTTTCATCATCAGAACAACAACAACAACAACAAAACCAAGATTGTTTCTACACACAAACAACATGGGAAAAATCAACAACAGATCAATGTATTCAACAATTTGATTCAGCACTTAGTTCAATGGTATCTTCACCTGCAGCATCAAATTCCAACATGTCAAATGAAAATTTTGTCATTAGAGAATTAATTGGTAAATTAGGAAACATTGGTAATTGTTCTGATGAGATCTCACAAACTTTAATTGCTACAAATTCATACAATACTTCATGTTACAATACACCTTTAAATTCTCCACCTAAATTGAACATTCAAACAATGGCTATGAACTCAACTGTTGCAGAATTTTCAACTGATCCTGGTTTTGCAGAAAGAGCTGCTAAATTTTCTTGCTTTGGAAGTAGAAGTTTCAATGGAAGAATAACACAAACACAATTGAATCAAACTCAAAGATCTACTCCATTGATGGAAAATGGAAAACTCTCTAGAGTTTCAAGTAGTCCATCATTGAAAGAACTTGGATCTCAATCTCAATCTCAACTTGGTATACAAGAAAATATGAATTGTTCATCTCAATTGCAGGATCAAATTGAAGTTAACAATAATTCTCAAGAAGAATCAACAATCTCTGAAAATGGTGTTAAACCTTCTCCTTATGTGAATTCAAGAAAAAGAAAAGTTTCATCCAAAGGAAAAACCAAAGAAAATTCAACTTCTAGTAATCCTCCAATGGCTTGTGAAGGTGTTGAAGATTCAAATTCAAAGAGAATGAAAACAAATGATGGTGAAAAAATTGAAAATGGCAAAGTGAAAACAGAGGAAGAGCTAAAGGGGGGTATAAATAGTAATGATGAAAAACAGAATAAGAGTAACACTAAACCTCCTGAGGCTCCTAAGGATTACATTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGTTAGGAGGGAGAAAATTAGTGAAAGGATGAAGCTTCTACAAGATCTTGTACCTGGTTGCAATAAGGTAACTGGGAAAGCACTCATGCTTGATGAAATTATAAACTATGTTCAATCATTGCAGCGCCAAGTTGAGTTTCTATCTATGAAATTGGCTACTGTGAACACAAGGATGGATTTAAGTATTGAGAGTCTAATCTCAAAAGATATATTTCAATCAAATAATTCTTTGGCACACCCAATATTCCCACAAGATTCCTCAGCACCATCCTATTATGGGCAGCAAAACCCAGCAATTCACAATAACATTTCTAATGGAAATGTGACCCACAACTCAGTGGACCCATTAGAAAATGGTTTATTCCAAAACCTTGGCATGCACTTATCTTCACTAAGTGGATTTAATGATGCTGCTTCTCAGTATCCATTAACATTCTCTGAGGATGATCTCCACAGCATTGTTCAAATGGGATTTGGGCAAACTGACAATAGAAAAACACCAATTCAATTTCAGAATTTGAACGGTACTAATCAACTACCCCTATGA 1578 0.3447 MENQFFSNTNVSQNLQPSSMPTWQSLSSSEQQQQQQNQDCFYTQTTWEKSTTDQCIQQFDSALSSMVSSPAASNSNMSNENFVIRELIGKLGNIGNCSDEISQTLIATNSYNTSCYNTPLNSPPKLNIQTMAMNSTVAEFSTDPGFAERAAKFSCFGSRSFNGRITQTQLNQTQRSTPLMENGKLSRVSSSPSLKELGSQSQSQLGIQENMNCSSQLQDQIEVNNNSQEESTISENGVKPSPYVNSRKRKVSSKGKTKENSTSSNPPMACEGVEDSNSKRMKTNDGEKIENGKVKTEEELKGGINSNDEKQNKSNTKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLATVNTRMDLSIESLISKDIFQSNNSLAHPIFPQDSSAPSYYGQQNPAIHNNISNGNVTHNSVDPLENGLFQNLGMHLSSLSGFNDAASQYPLTFSEDDLHSIVQMGFGQTDNRKTPIQFQNLNGTNQLPL* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2461 525 MobiDBLite consensus disorder prediction 1 30 - -
Tpr6g2461 525 MobiDBLite consensus disorder prediction 222 241 - -
Tpr6g2461 525 Pfam Helix-loop-helix DNA-binding domain 338 385 IPR011598 GO:0046983
Tpr6g2461 525 SMART finulus 340 390 IPR011598 GO:0046983
Tpr6g2461 525 MobiDBLite consensus disorder prediction 222 324 - -
Tpr6g2461 525 CDD bHLH_AtBPE_like 324 409 - -
Tpr6g2461 525 Gene3D - 331 406 IPR036638 GO:0046983
Tpr6g2461 525 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 332 403 IPR036638 GO:0046983
Tpr6g2461 525 Coils Coil 381 401 - -
Tpr6g2461 525 PANTHER BHLH TRANSCRIPTION FACTOR 32 521 - -
Tpr6g2461 525 MobiDBLite consensus disorder prediction 275 306 - -
Tpr6g2461 525 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 384 IPR011598 GO:0046983
Tpr6g2461 525 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 32 521 IPR024097 GO:0006355
Tpr6g2461 525 MobiDBLite consensus disorder prediction 167 204 - -
Tpr6g2461 525 MobiDBLite consensus disorder prediction 257 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2461 Tpr-Chr6 27002060 27006017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2461 1 491 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 45.365 3.30e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr6g2461 HLH 4.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2461 - - mtr:MTR_7g053410 847.04