Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2460 ATGGGTATTTCTAGGAGTTCATTGGTCAAGAGACGTGCAACTGGTGGCAAGCAGAAGCTCTGGAGAAAGAAGCGAAAGTACGAGCTTGGTCGCCAGCCAGCAAACACTAAGCTGTCAAGCAACAAGACAGTTAGGAGGATACGTGTTAGAGGTGGCAATGTGAAATGGAGAGCTCTTAGATTAGACACTGGAAATTTTAGCTGGGGTAGTGAGGCAGTAACTCGCAAGACTCGTCTTCTTGATGTGGTTTACAATTCCTCAAATAATGAGCTTGTTAGAACTCAAACTCTGGTTAAGAGTGCTATTGTCCAAGTTGATGCTGCACCATTCAAGCAGTGGTATCTTCAGCATTATGGTGTTGAAATTGGTCGAAAAAAGAAAACAGCATCCAAGAAGGATTCTGCTGAGGAGGCTGAAGTTGTTGCTGAAGAAGTCAAGAAAAGTGATCACGTGCAGAGAAAACTTGAGCAGCGTCAGAAAGATAGACAACTCGATCCCCACATTGAAGAGCAGTTTGGTGGCGGCCGTTTGCTAGCCTGTATTTCATCTCGCCCAGGTCAATGTGGCCGATCTGATGGGTACATTCTTGAAGGTAAGGAGTTGGAATTTTACATGAAGAAATTACAGAAGAAGAAAGGAAAGGGTGCTACTGCTTAA 657 0.4429 MGISRSSLVKRRATGGKQKLWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNSSNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTASKKDSAEEAEVVAEEVKKSDHVQRKLEQRQKDRQLDPHIEEQFGGGRLLACISSRPGQCGRSDGYILEGKELEFYMKKLQKKKGKGATA* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2460 218 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Tpr6g2460 218 Gene3D - 25 212 - -
Tpr6g2460 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 216 - -
Tpr6g2460 218 CDD Ribosomal_S8e_like 5 196 - -
Tpr6g2460 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 216 IPR001047 GO:0003735|GO:0005840|GO:0006412
Tpr6g2460 218 Pfam Ribosomal protein S8e 6 196 IPR022309 -
Tpr6g2460 218 Gene3D Ribosomal protein S8e, subdomain 108 175 IPR042563 -
Tpr6g2460 218 TIGRFAM eS8: ribosomal protein eS8 1 198 IPR001047 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2460 Tpr-Chr6 26977812 26980323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2460 1 205 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 83.415 4.77e-125 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2460 K02995 - gmx:100500112 370.548