Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2458 ATGAACGAAGATTTCGATATCCCTCAAGCCGAAGAAATCAACGAGGATTTCGATCTCCCTGAAGACAAGGTAGGCGAAGAGAGACAAGTCGGCGATGGTGGTCTCAAGAAGAAGCTTCTCAAGGAAGGTGAAGGTTGGGATACACCTGAATTCGGAGATGAAGTTCAAGTTCACTACACCGGGACTTTGCTTGATGGAACAAAATTTGATTCGAGTCGTGATAGAGATTCTCCTTTCAGCTTCACGCTTGGACAAGGGCAAGTAATTCAAGGGTGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCACTCTTCACCATCCCTCCCGAGCTAGCTTATGGTGTATCTGGTTCACCTCCAACAATTCCTCCTAATGCAACACTCCAATTTGATGTTGAGCTGTTGTCTTGGACAAGTGTGAAGGACATATGTAAAGATGGCGGTATATTTAAGAGGATACTTACTGAGGGGGAGAAATGGGAGAATCCCAAGGATCCTGATGAAGTATTGGTTAATTATGAGGTTCGTCTCGAGGATGGAAAGGTTGTAGCAAAGTCGGATGGGGTGGAGTTCACTGTCAGTGAAGGTCATTATTGCCCTGCACTCTCAAAGGCTGTTAAATCCATGAAGAAGGGAGAGAAAGTGATTTTATTAGTAAAGCCTCAATATGGATTTGGCGAGAAGGGGAAGCCAGTGCGTGGTGATGAAGGTGCAGTTCCACCAAATGCATCACTGCAGATTACACTTGAGTTGGTTTCTTGGAAGACTGTTTCAGATGTGACTAGCGACAAGAAGGTCATAAAGAAGATCCTCAAGGAAGGGGAAGGATTTGAGCGTCCAAATGAAGGGGCCGTTGTAAAATTGAAACTAATTGGTAAGCTGCAAGATGGTACTGTCTTTTTTGAAAAGGGCCGTGACAATGAAGAGAAGCTGTTTGAATTCAAAACAGATGAGGAGCAAGTCATTGATGGACTAGATAAAGCTGTAATGACTATGAAGAAGGGTGAGGCAGCATTACTGACTATTGCTCCTGAGTATGCATTTGGTTCATCAGAGTCCCAGCAGGAGTTGGCTGTAATTCCTTCTAATTCAACTGTCTATTATGAAGTTGAACTAGTGGCATTTGATAAGGAGAAGGAATCTTGGGATATGAGCACTGAAGAGAAAATTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGAAATGTTTTGTTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATATGAGAAGGCTGTGAAGTACATAGAGTATGATTCCTCCTTCAGTGATGAGGAGAAAAAGCTGTCAAAGACCTTGAAGATTGCTTCCTTATTAAACAATGCTGCTTGCAAGTTGAAGTTGAAAGAGTACAAAGATGCAGAGAAGTTGTGTACTAAGGTTTTGGACATTGAGAGCACAAACGTTAAAGCCCTATATAGAAGGGCTCAAGCAAGTATACAGCTAACTGACTTGGATTTGGCTGAAATTGACATTAAAAAGGCTCTTGAGGTTGATCCTGACAACAGGGAAGTAAAGCTGGAGTACAGGAATTTGAAGGAAAAGGTTAAGGAGTACAATAAAAAGCAGGCAAAATTTTATGGAAACATGTTCAGCTTGACAAAGTCTTGA 1638 0.4176 MNEDFDIPQAEEINEDFDLPEDKVGEERQVGDGGLKKKLLKEGEGWDTPEFGDEVQVHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIQGWDEGIKTMKKGENALFTIPPELAYGVSGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKRILTEGEKWENPKDPDEVLVNYEVRLEDGKVVAKSDGVEFTVSEGHYCPALSKAVKSMKKGEKVILLVKPQYGFGEKGKPVRGDEGAVPPNASLQITLELVSWKTVSDVTSDKKVIKKILKEGEGFERPNEGAVVKLKLIGKLQDGTVFFEKGRDNEEKLFEFKTDEEQVIDGLDKAVMTMKKGEAALLTIAPEYAFGSSESQQELAVIPSNSTVYYEVELVAFDKEKESWDMSTEEKIEAAGKKKEEGNVLFKAGKYARASKRYEKAVKYIEYDSSFSDEEKKLSKTLKIASLLNNAACKLKLKEYKDAEKLCTKVLDIESTNVKALYRRAQASIQLTDLDLAEIDIKKALEVDPDNREVKLEYRNLKEKVKEYNKKQAKFYGNMFSLTKS* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2458 545 SUPERFAMILY FKBP-like 259 395 - -
Tpr6g2458 545 SUPERFAMILY TPR-like 383 540 IPR011990 GO:0005515
Tpr6g2458 545 MobiDBLite consensus disorder prediction 1 20 - -
Tpr6g2458 545 Gene3D Tetratricopeptide repeat domain 381 538 IPR011990 GO:0005515
Tpr6g2458 545 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 285 378 IPR001179 GO:0003755
Tpr6g2458 545 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 377 542 - -
Tpr6g2458 545 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 266 376 - -
Tpr6g2458 545 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 264 - -
Tpr6g2458 545 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 168 257 IPR001179 GO:0003755
Tpr6g2458 545 Gene3D - 258 379 IPR046357 GO:0003755
Tpr6g2458 545 SMART tpr_5 478 511 IPR019734 GO:0005515
Tpr6g2458 545 SMART tpr_5 444 477 IPR019734 GO:0005515
Tpr6g2458 545 SMART tpr_5 395 428 IPR019734 GO:0005515
Tpr6g2458 545 MobiDBLite consensus disorder prediction 1 33 - -
Tpr6g2458 545 Gene3D - 142 257 IPR046357 GO:0003755
Tpr6g2458 545 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 48 137 IPR001179 GO:0003755
Tpr6g2458 545 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 375 IPR001179 GO:0003755
Tpr6g2458 545 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 163 253 IPR001179 GO:0003755
Tpr6g2458 545 PANTHER PEPTIDYLPROLYL ISOMERASE 266 376 - -
Tpr6g2458 545 PANTHER PEPTIDYLPROLYL ISOMERASE 1 264 - -
Tpr6g2458 545 PANTHER PEPTIDYLPROLYL ISOMERASE 377 542 - -
Tpr6g2458 545 ProSiteProfiles TPR repeat profile. 478 511 IPR019734 GO:0005515
Tpr6g2458 545 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 52 140 IPR001179 GO:0003755
Tpr6g2458 545 SUPERFAMILY FKBP-like 14 144 - -
Tpr6g2458 545 Coils Coil 511 531 - -
Tpr6g2458 545 SUPERFAMILY FKBP-like 144 260 - -
Tpr6g2458 545 Pfam Tetratricopeptide repeat 479 511 IPR019734 GO:0005515
Tpr6g2458 545 Gene3D - 7 141 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2458 Tpr-Chr6 26961406 26968909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2458 23 541 Calmodulin-binding Proteins AT3G25230 78.420 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2458 K09571 - gmx:100812632 910.983