Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2453 ATGTCTGAGCGAATTTTCATTGAAAATGTTGAGGATAGAAAATTGAAGCATAAAATGGAGGAGAAGTCAGAGCCAAGATTTGAGAAGGAACCAAAGGCAATACCAGCATCCTCTCAATCTGATGTTGAGGCTATAGTTACTCCAAGACTTGACATTTGCACCAAGTCCACTTCCGCGCCATTGGAGATTGGTGAACATTCAACTTCATATAAGAATGCTACTGATGAACCTTTACCTGAGCAAGAAGTGAGGGAAATCCCTTGTCATTATTGCGACAAGAAATTCTCCTCTCCTCAAGCATTTGGAGGTCACCAAAACGCTCATAAGCGTGAACGTTACTTCAAAAAAATTGAAGAACAAAGGAGAGAGGATGAAATAAATTCAATCATAGGATTTAGATCTAGTAATCAAATATACCCTTATTCATTTTCAAGCCCTATTAACTATCAAAGGTATTCTTATTTTCATAATGCTAATTTCCCCCACCTAATTAGCCCTAGTATGAACAATACCATGACTTCTTGGGCTAGTGGTTCTCCTTCTAGTGGCTATGGTGGGTTGTATATGCCAAATACAACCCCTACAATACCCCAATTTGTGATGCAAATGCCAAATTCATCCTTCACAACACCACAATTTGGGATCCCTAATTTTTGGGATGGAAATCAAAATGCTTCATTGCCAATTCCACAAAGATCAAACACTTTCGGTTTGGGGCTTTTTTCTCAAGCAAATCAAACCCCTTCAATTGTTGAAGGTGCGGAAAGAAATGTCAATGCTCAACTTGGTTCTCAAACTCTTCAACTGTTACCTCGTGATCCTATTAGAGAAGGGCCAAATCAAGCAAATCTCAATACGTCTTTATCATCAGCTCAATCAACCACAGAGGAAGTTAACTTGGATCTCACCCTTTAA 915 0.3891 MSERIFIENVEDRKLKHKMEEKSEPRFEKEPKAIPASSQSDVEAIVTPRLDICTKSTSAPLEIGEHSTSYKNATDEPLPEQEVREIPCHYCDKKFSSPQAFGGHQNAHKRERYFKKIEEQRREDEINSIIGFRSSNQIYPYSFSSPINYQRYSYFHNANFPHLISPSMNNTMTSWASGSPSSGYGGLYMPNTTPTIPQFVMQMPNSSFTTPQFGIPNFWDGNQNASLPIPQRSNTFGLGLFSQANQTPSIVEGAERNVNAQLGSQTLQLLPRDPIREGPNQANLNTSLSSAQSTTEEVNLDLTL* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2453 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Tpr6g2453 304 PANTHER ZINC FINGER PROTEIN JAGGED 69 304 IPR045320 GO:0003700
Tpr6g2453 304 MobiDBLite consensus disorder prediction 284 304 - -
Tpr6g2453 304 SUPERFAMILY beta-beta-alpha zinc fingers 87 115 IPR036236 -
Tpr6g2453 304 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Tpr6g2453 304 PANTHER ZINC FINGER PROTEIN KNUCKLES 69 304 - -
Tpr6g2453 304 MobiDBLite consensus disorder prediction 18 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2453 Tpr-Chr6 26927179 26928147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2453 67 116 C2H2 Transcription Factor Family AT1G67030 46.296 1.01e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr6g2453 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2453 - - cam:101490368 248.054