Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2449 ATGGGTGAGCATCAGGAAATTGGCGAGCATCAAGCAATTGGCGAACATCAGACAATCGACGAGCATCAGGCAATTGACGAGCATCAGATTCATATCTTGATGAAGAAAATCCATTTGTTAAAAGAAAAAATCCAAATGGATCGAATTGAATCAATACAAGATAAACTTAGGATAAATGGAGAGAATCTCCAACTTCAACTTTCGAAGATCATGACAATAGCGTCAAGAAAGGCTAAGGATGATACTGTTCAAATGTTTTCGTTAAGAATTAACCAACCGTTGTATACATTTAAAGATTTTTCTAAAGATTCAAAAATGAATGAAGAAATTTTCAATCAAGGTATACAATTTGAAGGAAGTATCACGCTACAAAAAGAAGAAAAGATACCTCATTTTACATTCTGGTCACATTTGGTTAGAAATAAGATAATGACCAAAGATCAAGCATTTTCTGCAAGAAAAAACATATACTATGATCAACATGGTGAAGCATTGATATGCAGTGATCCTGATGAAGAGGTCAAAGAGAATAAAGAAGTTAAACATGAATTTTCTCACGGTGAAGACCAAATTATAAGGATGGCATTTGAGGAGCATGATTTATCTGAAGAGGTCTTGAGTATTGTTCAAAATTGTATTGGGGGTACCTATTCAGAGATTCAGGAGAGGTATAAATATCTCAAGGAAAAGAGCATGCATTCTACAGAAAGTGGATCTAGTAGTGGCATATGTTTGGACAAAAGTTTGAGTGAAGCTATAAATACTTTGGATCACTTGTTTTGTCGTCGTTGCTTGATCTATGACTGTCCGTTCCATGAATGTCCACAACGGTTATTTTATCCGACTGAAAAACAACCAATATGGAATGAACCGGAAAATGAAAGGCAACCATGTGGTGAACATTGTTACCTTGAGTTAAAGGATGCCAACACAAATTCAACTCCAGAGTCTTTGCTAGGTAAAGAAATTAAAACAATGGAAACTGCAGATGAGGTATTTGCATCCTCTAGCTCAAAAACAATCACAGATAAAATAGAATTGATGAGATTATCCAACTCAATGGAAGAGCCAGAACAAGATGATAGCTCAGATTGGAAACCTTTGGAAAAAGAATTATGTTTGAAGGGAATTGAAATGTTTGGAAAAAACAGTTGTCTTATATTTCGGAACTTACTTTGTGGATTCAAGACTTGCATGGAAATAGGTACCTACATATCTGAAAGGTTCAAGGACCATGAGATGCCATCAAGTTCAAGGCGATCTAAGAGAAAAGGAAAAAGCAAGAGATTTTTTCATAGGAGAAGAAATATTAATATTGCTAAGGAAGAAGACGACGAACCCGTTATCCTTAAGCATTATATACCTTGTGAGTGTCAAGGAATGTGTGGAAAAGAATGTCCTTGTTATGTTAATGGACCTAAAGGAACTTGTGAAAAATACTGTGGGTGTTCAAAGCAATGCAAACATCGGTACAAAGGATGTCTTTGTTATATAGGTCAATGTAGAAGTGGACAATGTCCATGTTTTGCAGAAGGTCGTGAATGTGACCCTGATGTCTGTATAAATTGTAGGGTTAGGTGTGGCGATGGTTCATCAGAGGAGCCACCACATCAAAAAAATGGTAAATGTGAAAATATGAAAATATTTTTGGGTAAAAAACAAAAGATTCTTTTAGGCGGGTCTGAAGTTGCTGGATGGGGAGCCTTCATAAAGAATCCTGTCAAAAAAGATGAATATTTAGGAGAATACACAGGTGAATTAATCTCTCATACAGAAGCAGAAAAACGTGGTATATTGTATGAGCATGCAGGCTTCTCTTACCTTTTTGACTTGGATGATAAGTATTGTATTGATGCTTATCGGATGGGAAACAAGTTAAAATTTGCAAACCACTCACCAAATCCCAATTGTTATCCAAGGGGTATATTTGTTGGAGGAGACAATCGAATAGGCATATTTGCCAAGGATGACCTTAAAGCTGGTGAAGAACTTTTCTATGATTACCACTATAACCAAAAATATCAAAAAGCACCTAAATGGTTTCTTGAACAATCCAAGAAAAAAGAATCTAAAAATTCTGGTGGCAAAGGTAGGGTTGTTTCAAAGGTCAAGTAG 2115 0.3584 MGEHQEIGEHQAIGEHQTIDEHQAIDEHQIHILMKKIHLLKEKIQMDRIESIQDKLRINGENLQLQLSKIMTIASRKAKDDTVQMFSLRINQPLYTFKDFSKDSKMNEEIFNQGIQFEGSITLQKEEKIPHFTFWSHLVRNKIMTKDQAFSARKNIYYDQHGEALICSDPDEEVKENKEVKHEFSHGEDQIIRMAFEEHDLSEEVLSIVQNCIGGTYSEIQERYKYLKEKSMHSTESGSSSGICLDKSLSEAINTLDHLFCRRCLIYDCPFHECPQRLFYPTEKQPIWNEPENERQPCGEHCYLELKDANTNSTPESLLGKEIKTMETADEVFASSSSKTITDKIELMRLSNSMEEPEQDDSSDWKPLEKELCLKGIEMFGKNSCLIFRNLLCGFKTCMEIGTYISERFKDHEMPSSSRRSKRKGKSKRFFHRRRNINIAKEEDDEPVILKHYIPCECQGMCGKECPCYVNGPKGTCEKYCGCSKQCKHRYKGCLCYIGQCRSGQCPCFAEGRECDPDVCINCRVRCGDGSSEEPPHQKNGKCENMKIFLGKKQKILLGGSEVAGWGAFIKNPVKKDEYLGEYTGELISHTEAEKRGILYEHAGFSYLFDLDDKYCIDAYRMGNKLKFANHSPNPNCYPRGIFVGGDNRIGIFAKDDLKAGEELFYDYHYNQKYQKAPKWFLEQSKKKESKNSGGKGRVVSKVK* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2449 704 CDD SET_EZH 554 670 - -
Tpr6g2449 704 ProSiteProfiles SET domain profile. 554 669 IPR001214 GO:0005515
Tpr6g2449 704 Pfam CXC domain 493 524 IPR041355 -
Tpr6g2449 704 MobiDBLite consensus disorder prediction 685 704 - -
Tpr6g2449 704 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 339 696 IPR045318 GO:0006338|GO:0018024
Tpr6g2449 704 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 26 344 IPR045318 GO:0006338|GO:0018024
Tpr6g2449 704 SUPERFAMILY SET domain 447 679 IPR046341 -
Tpr6g2449 704 ProSiteProfiles CXC domain profile. 434 540 IPR026489 -
Tpr6g2449 704 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 26 344 - -
Tpr6g2449 704 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 339 696 - -
Tpr6g2449 704 SMART set_7 554 675 IPR001214 GO:0005515
Tpr6g2449 704 Pfam SET domain 565 668 IPR001214 GO:0005515
Tpr6g2449 704 Gene3D SET domain 453 671 IPR046341 -
Tpr6g2449 704 SMART CXC_2 492 526 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2449 Tpr-Chr6 26886893 26894405 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2449 543 668 C2H2 Transcription Factor Family AT2G23740 30.769 4.10e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr6g2449 SET 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2449 - - mtr:MTR_7g055660 777.319