Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2410 ATGTGGAAGAAAAAAAGAAAGGATGAAATGCTGCAGCAATCAAACCAAGATTCCTCGGAAGAAGAGATCGGTGGTCAAAGCAACACACATTCAAGTCTACCGTTTTTCAGCTTGAAAACAATAATAACAGCTACAAGAAATTTTAGTCAAGAGAATAAGCTTGGACAAGGTGGATTTGGCTCTGTCTATAAGGGTTGCTTGGTTAATCGACAAGAGGTAGCAGTGAAACGATTGTCCAGAGATTCAGGTCAAGGCAAACAAGAGTTTAAAAATGAGGTTACACTTTTAGTTAAACTCCAACATCGAAATCTAGTGAGACTGCTTGGTTGCTGTTGTGATAAAGAAGAAAGGATGCTAGTTTACGAATACCTACCGAACAAAAGTCTAGACTTCTTTATATTCAATCAAAACCAAAGGTCATCGTTGGATTGGAGTAAGCGTTTTGAAATTATTTGTGGGATTGCTCGAGGTGTTTTATATCTTCATCAAGATTCAAGGCTGAAAATAATTCATAGAGATCTAAAAGCCAGCAATGTTCTCCTTGATGCTGCAATGAATCCCAAAATCTCAGATTTTGGTATGGCTAGAATATTTGGAGAAGATGAAGTCCAAGCAAGAACGAAAAGAGTGGTCGGAACATATGGATATATGTCACCAGAATATGCAATGGAAGGACGGTACTCAACAAAATCTGATGTCTTCAGTTATGGTGTGATGCTACTGGAGATTATTGCTGGCCAAAGAAACACACATTGTGAAATAGGAAGAGAATCCCCTAATTTAACTGGACATGTGTGGACACTATGGACAGAAGGAAGAGGTTTGGAAATCGTTGATGCAGTACTAAACCAATCTTATCCTTCTGTTATAGTTCTGAGATGCATTCAAATTGGACTATTGTGTGTGCAACAAAATGCCATGAATAGACCATCAATGTCAGAAGTTGTTTTCATGCTATGCAATGAAACACCTCTTTGCCAACCTCAAAAACCAGCATTCTTATTCAATGCAGGCAAACAAGATTTGCAAGACTCGTCAACATCAGGAGGAGGATCTTCAATAAATGAATTAACGGAAACTACCATCAGTGGCCGCTAA 1098 0.3843 MWKKKRKDEMLQQSNQDSSEEEIGGQSNTHSSLPFFSLKTIITATRNFSQENKLGQGGFGSVYKGCLVNRQEVAVKRLSRDSGQGKQEFKNEVTLLVKLQHRNLVRLLGCCCDKEERMLVYEYLPNKSLDFFIFNQNQRSSLDWSKRFEIICGIARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDEVQARTKRVVGTYGYMSPEYAMEGRYSTKSDVFSYGVMLLEIIAGQRNTHCEIGRESPNLTGHVWTLWTEGRGLEIVDAVLNQSYPSVIVLRCIQIGLLCVQQNAMNRPSMSEVVFMLCNETPLCQPQKPAFLFNAGKQDLQDSSTSGGGSSINELTETTISGR* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2410 365 ProSiteProfiles Protein kinase domain profile. 48 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2410 365 SMART serkin_6 48 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2410 365 Gene3D Phosphorylase Kinase; domain 1 7 123 - -
Tpr6g2410 365 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 357 - -
Tpr6g2410 365 MobiDBLite consensus disorder prediction 344 365 - -
Tpr6g2410 365 CDD STKc_IRAK 54 321 - -
Tpr6g2410 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Tpr6g2410 365 SUPERFAMILY Protein kinase-like (PK-like) 29 330 IPR011009 -
Tpr6g2410 365 MobiDBLite consensus disorder prediction 1 28 - -
Tpr6g2410 365 Pfam Protein tyrosine and serine/threonine kinase 50 317 IPR001245 GO:0004672|GO:0006468
Tpr6g2410 365 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKS1 10 357 - -
Tpr6g2410 365 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
Tpr6g2410 365 Gene3D Transferase(Phosphotransferase) domain 1 124 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2410 Tpr-Chr6 26577121 26580753 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2410 36 341 Receptor kinase-like Gene Family AT3G45860 57.282 6.74e-125 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr6g2410 PK_Tyr_Ser-Thr 1.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2410 - - mtr:MTR_4g091840 627.861