Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2409 ATGGAATCTGCTAGAAATCTTCTCTACCTTGTCACAGCCAAAAATCTTAAACACAAGATAGTATTACATAACAATTGGTTGCTTATAAACTCTTTGATTCTACTTATTACCTTTTCCTTTTGCTCTTGTTCTTCTGATACCATATCCACTGATAAACCAATAAGAGATGGTGAGGTTCTTGTTTCTAAATCTAAAACTTTTGCTCTTGGATTCTTCACTCCAGAAAAGTCCACCTCTCGCTATGTCGGAATTTGGTACAACAATTTGCCAATCCAAACTGTTGTTTGGGTTGCAAACAGAGATAGTCCAATCAATGACACTTCTGGAATCCTATCGATAGACCGAAATGGAAATCTAGTACTCTACCACAACCTTAGCACTATTACCATTTGGTCTACAAATGTTTCAATCCCACAATCACAAGGAAATAGTACCAGTGTCGTAGCTCAGCTATCGGATATAGCAAATCTTGTTCTGATGATAAACAATACCAAAACTGTTATCTGGGAAAGCTTTGATCATCCCACAGATACCTTGCTTCCGTATCTAAAGGTTGGTTTTGATAGAAAAACTAATCAAAGTTGGTTCCTTCAATCATGGAAGACAGATGTTGACCCTGGAAAAGGCGCATTCACGTTGAAATTCAGCACCATTGGCAAAACTCAGTTGTTTATGTACAACGGTGATCTTCCTTGGTGGCGTGGTGGACATTGGAACGGAGAATTATTAGTAGGTGTACCTAATATGAAACGAGATATGGCCACTTTTAACGTTTCTTTGGTTGAAGATGACAATCATGTAGCACTCACATATAACATGTTTGATAAGTCTGTCATTACTAGGATTGTGGTTCAGCAATCTGGTTTCTTTCAAACATTCATGTGGGACAGTCAAAAGACTCAATGGAACCGGTACTGGTCTGAACCAACAAATCAATGCGATAACTATGCAACATGTGGAACAAACAGTAATTGTGACCCTTTCAACTTTGAGGACTTTAAGTGTACTTGTTTACTTGGTTTTGAACCGAAATTTCCACGTGATTGGTATGATAGTAGAGATGGGTCAGGAGGATGTGTAAGAAAGAAAGGTGTATCTATCTGTGATAATGGAGAAGGGTTTGTCAAAATTGTAAGCTTGAAAGTTCCTGATACATCTGTAGCAGTTGCTAAAGGTGGTTTGAGTTTGGAAGAATGTGAAAAAGAATGCTTAAGAAACTGCTCTTGTACTGCCTATGCATTTGCTGATGTGAGGAATGGTGGAAGTGGATGTTTGACTTGGTATGGTGATTTAATGGACATTCAAAAACTTAGTGATCAAGGCCAAGATTTATTTTTACGCGTCGATGGTGTTGAATTAGCAAATAGCAACAAAAGCAGCAAAGCAATCCTTGGTAGAAAGAGGTTGGCTGCGGTTCTGCAATCAAACCAAGATTCCTCGGAAGAAGAGATCGGTGGTCAAAGCAACACACATTCAAGTCTACCGTTTTTCAGCTTGAAAACAATAATAACAGCTACAAGAAATTTTAGTCAAGAGAATAAGCTTGGACAAGGTGGATTTGGCTCTGTCTATAAGGGTTGCTTGGTTAATCGACAAGAGGTAGCAGTGAAACGATTGTCCAGAGATTCAGGTCAAGGCAAACAAGAGTTTAAAAATGAGGTTACACTTTTAGTTAAACTCCAACATCGAAATCTAGTGAGACTGCTTGGTTGCTGTTGTGATAAAGAAGAAAGGATGCTAGTTTACGAATACCTACCGAACAAAAGTCTAGACTTCTTTATATTCAATCAAAACCAAAGGTCATCGTTGGATTGGAGTAAGCGTTTTGAAATTATTTGTGGGATTGCTCGAGGTGTTTTATATCTTCATCAAGATTCAAGGCTGAAAATAATTCATAGAGATCTAAAAGCCAGCAATGTTCTCCTTGATGCTGCAATGAATCCCAAAATCTCAGATTTTGGTATGGCTAGAATATTTGGAGAAGATGAAGTCCAAGCAAGAACGAAAAGAGTGGTCGGAACATATGGATATATGTCACCAGAATATGCAATGGAAGGACGGTACTCAACAAAATCTGATGTCTTCAGTTATGGTGTGATGCTACTGGAGATTATTGCTGGCCAAAGAAACACACATTGTGAAATAGGAAGAGAATCCCCTAATTTAACTGGACATGTGTGGACACTATGGACAGAAGGAAGAGGTTTGGAAATCGTTGATGCAGTACTAAACCAATCTTATCCTTCTGTTATAGTTCTGAGATGCATTCAAATTGGACTATTGTGTGTGCAACAAAATGCCATGAATAGACCATCAATGTCAGAAGTTGTTTTCATGCTATGCAATGAAACACCTCTTTGCCAACCTCAAAAACCAGCATTCTTATTCAATGCAGGCAAACAAGATTTGCAAGACTCGTCAACATCAGGAGGAGGATCTTCAATAAATGAATTAACGGAAACTACCATCAGTGGCCGCTAA 2481 0.3845 MESARNLLYLVTAKNLKHKIVLHNNWLLINSLILLITFSFCSCSSDTISTDKPIRDGEVLVSKSKTFALGFFTPEKSTSRYVGIWYNNLPIQTVVWVANRDSPINDTSGILSIDRNGNLVLYHNLSTITIWSTNVSIPQSQGNSTSVVAQLSDIANLVLMINNTKTVIWESFDHPTDTLLPYLKVGFDRKTNQSWFLQSWKTDVDPGKGAFTLKFSTIGKTQLFMYNGDLPWWRGGHWNGELLVGVPNMKRDMATFNVSLVEDDNHVALTYNMFDKSVITRIVVQQSGFFQTFMWDSQKTQWNRYWSEPTNQCDNYATCGTNSNCDPFNFEDFKCTCLLGFEPKFPRDWYDSRDGSGGCVRKKGVSICDNGEGFVKIVSLKVPDTSVAVAKGGLSLEECEKECLRNCSCTAYAFADVRNGGSGCLTWYGDLMDIQKLSDQGQDLFLRVDGVELANSNKSSKAILGRKRLAAVLQSNQDSSEEEIGGQSNTHSSLPFFSLKTIITATRNFSQENKLGQGGFGSVYKGCLVNRQEVAVKRLSRDSGQGKQEFKNEVTLLVKLQHRNLVRLLGCCCDKEERMLVYEYLPNKSLDFFIFNQNQRSSLDWSKRFEIICGIARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDEVQARTKRVVGTYGYMSPEYAMEGRYSTKSDVFSYGVMLLEIIAGQRNTHCEIGRESPNLTGHVWTLWTEGRGLEIVDAVLNQSYPSVIVLRCIQIGLLCVQQNAMNRPSMSEVVFMLCNETPLCQPQKPAFLFNAGKQDLQDSSTSGGGSSINELTETTISGR* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2409 826 SMART blect_4 51 175 IPR001480 -
Tpr6g2409 826 Pfam Protein tyrosine and serine/threonine kinase 511 777 IPR001245 GO:0004672|GO:0006468
Tpr6g2409 826 Gene3D Phosphorylase Kinase; domain 1 469 584 - -
Tpr6g2409 826 MobiDBLite consensus disorder prediction 805 826 - -
Tpr6g2409 826 ProSitePatterns Protein kinases ATP-binding region signature. 515 537 IPR017441 GO:0005524
Tpr6g2409 826 Pfam D-mannose binding lectin 93 201 IPR001480 -
Tpr6g2409 826 Gene3D Hepatocyte Growth Factor 366 446 - -
Tpr6g2409 826 ProSiteProfiles PAN/Apple domain profile. 368 449 IPR003609 -
Tpr6g2409 826 SUPERFAMILY Protein kinase-like (PK-like) 490 790 IPR011009 -
Tpr6g2409 826 PANTHER GLYCOPROTEIN S13, PUTATIVE-RELATED 28 478 - -
Tpr6g2409 826 PANTHER GLYCOPROTEIN S13, PUTATIVE-RELATED 481 823 - -
Tpr6g2409 826 ProSiteProfiles Bulb-type lectin domain profile. 45 172 IPR001480 -
Tpr6g2409 826 Gene3D - 38 172 IPR036426 -
Tpr6g2409 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Tpr6g2409 826 CDD STKc_IRAK 515 782 - -
Tpr6g2409 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 94 206 IPR036426 -
Tpr6g2409 826 SMART serkin_6 509 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2409 826 Gene3D Transferase(Phosphotransferase) domain 1 585 789 - -
Tpr6g2409 826 PIRSF SRK 18 826 IPR024171 GO:0004674
Tpr6g2409 826 SMART ntp_6 369 448 IPR003609 -
Tpr6g2409 826 CDD B_lectin 51 175 IPR001480 -
Tpr6g2409 826 Pfam S-locus glycoprotein domain 233 345 IPR000858 GO:0048544
Tpr6g2409 826 PANTHER - 481 823 - -
Tpr6g2409 826 PANTHER - 28 478 - -
Tpr6g2409 826 Pfam PAN-like domain 368 434 IPR003609 -
Tpr6g2409 826 ProSiteProfiles Protein kinase domain profile. 509 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2409 826 CDD PAN_AP_plant 369 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2409 Tpr-Chr6 26576950 26604728 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2409 497 825 Receptor kinase-like Gene Family AT4G11530 55.287 1.90e-118 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr6g2409 PK_Tyr_Ser-Thr 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2409 - - mtr:MTR_4g091840 1350.5