Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2404 ATGGCTGGTGGTGCAGCTATTATATTTTTGGCAGTAGGATTATGTTTCTTGTGGAGGAAGAAAAAATTGCAGTTTCTATTGAATTTGAAAGGGAAGCATGAAAAAAGAGGTTCATTAGAAAAAAGTCAGGATTTGCTTATAACTGATGGAGTGTTTACAAGTAATAGAGAACAATCAAATGAAAATAACATGGATGATCTAGAATTGCCGTTCTTCGATTTTAATACCATAACTATGGCTACAAACAATTTCTCTGAACAAAATAAACTTGGACAAGGAGGCTTCGGTATTGTTTACAAAGGTAGGTTGTTGGAAGGTCAAGATATTGCGGTAAAGAGATTATCAAAAAATTCTGGCCAAGGTGTTGAAGAATTTAAAAATGAGGTAAAGTTGATTGTTAAGCTTCAACATCGAAACCTTGTTCGACTACTTGGTTGCAGCTTTGAGATAGATGAAAAGGTTCTAGTTTATGAGTACATGGAAAATAGAAGCCTTGATGCTATTTTGTTCGACAAAGCTAAAAGATCCTCGCTAGACTGGCAAACACGCTTCAACATTATATGTGGAATAGCTAGAGGACTTCTTTACCTTCACCAAGATTCTAGATTTAGGATCATCCATAGAGATCTTAAGGCAAGCAACATTTTACTTGACCGAGAAATGAATCCAAAGATATCAGATTTTGGGATGGCTAGAATTTTTGGCACGGATCAGACGGAGGCAAATACAGTTAGAGTCGTTGGAACATATGGCTATATGTCGCCTGAATATGCTATGGATGGAATCTTCTCCGTGAAATCTGATGTTTTTAGTTTCGGTGTTCTTGTGATGGAGATCATAAGTGGAACAAAGAACCGAGGTTTCTATTCCGCAAACAAAGAATTGAATCTTCTCGGTCATAGTTGGAAGCTTTGGAAAGAAGGAAAAGCTTTGGAACTGATTGATTCTTCCATTGGTAATTCATATTCACCTTCTGTGGTTCATAGATGCATACAAGTTGGGCTATTATGCGTACAAGAGCGAGCAGAAGATAGACCAACAATGTCTTCAGTGGTGTTGATGTTGAGTAGTGAAACAGCGACAATAGCAGAGCCGAAAAATCCTGGATTTTGCCTAGGAAGCAATCCTATTGAAACTGATTCTTCTTCAAGTAAAAAAGATGAATCTTGCACAGTGAACCAAGTTACCTGCACAATGGTAGATGGCAGATAG 1212 0.3754 MAGGAAIIFLAVGLCFLWRKKKLQFLLNLKGKHEKRGSLEKSQDLLITDGVFTSNREQSNENNMDDLELPFFDFNTITMATNNFSEQNKLGQGGFGIVYKGRLLEGQDIAVKRLSKNSGQGVEEFKNEVKLIVKLQHRNLVRLLGCSFEIDEKVLVYEYMENRSLDAILFDKAKRSSLDWQTRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDREMNPKISDFGMARIFGTDQTEANTVRVVGTYGYMSPEYAMDGIFSVKSDVFSFGVLVMEIISGTKNRGFYSANKELNLLGHSWKLWKEGKALELIDSSIGNSYSPSVVHRCIQVGLLCVQERAEDRPTMSSVVLMLSSETATIAEPKNPGFCLGSNPIETDSSSSKKDESCTVNQVTCTMVDGR* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2404 403 SMART serkin_6 84 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2404 403 PANTHER - 36 402 - -
Tpr6g2404 403 Pfam Protein tyrosine and serine/threonine kinase 87 353 IPR001245 GO:0004672|GO:0006468
Tpr6g2404 403 SUPERFAMILY Protein kinase-like (PK-like) 63 355 IPR011009 -
Tpr6g2404 403 Pfam Domain of unknown function (DUF3403) 357 403 IPR021820 GO:0004674
Tpr6g2404 403 ProSiteProfiles Protein kinase domain profile. 84 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2404 403 ProSitePatterns Protein kinases ATP-binding region signature. 90 112 IPR017441 GO:0005524
Tpr6g2404 403 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 36 402 - -
Tpr6g2404 403 Pfam Receptor serine/threonine kinase 40 74 IPR022126 GO:0004674
Tpr6g2404 403 Gene3D Phosphorylase Kinase; domain 1 57 159 - -
Tpr6g2404 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Tpr6g2404 403 CDD STKc_IRAK 90 355 - -
Tpr6g2404 403 Gene3D Transferase(Phosphotransferase) domain 1 160 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2404 Tpr-Chr6 26538239 26540022 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2404 72 380 Receptor kinase-like Gene Family AT4G11530 61.935 3.12e-140 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr6g2404 PK_Tyr_Ser-Thr 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2404 - - cam:101504189 699.123