Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2395 ATGGCAGAGGAGGGTTTTGAACATTACCATATACCACAACAAAGCAGAAGAGAAAAGCTTAGATTTTTATCTCAAAACCAACCAAATTTCATTGAATCTTCAACAACCCTTCATCCAAATTATCCACCTTTACCTTCTCCCTACGACCCTTCACTCATTTCTTCTCTTTTCTTACCTTCAACCAACCAAAACCACAGTATAATGAATCCTAACCCTTTACTTTATCAACCACAAAACCATGGTTACACTGATATTAGTGCTAGTAGTAGTAGTAACACTAACAACAATGAAGTAATGTTGTTAAAGTCTGAACCTTTATCATTAACTTTATCATCAAACCAAAACAATTATCAGATGAATATTCATAACCCTTTAGAGGTTAATAACCTTCAGAAATATGGTTCTGTTATTGATGTTTCAAGGAACACAGTTCCATTAGGACCATTTACTGGTTATGCTACTGTTTTGAAGGGATCAAGGTTTTTGAAACCTGCTCAACAACTATTAGATGAGATATGTTATGTTGGGATTTGTGCTGATGAAAAAATTGTTACTGCTGTTGATGCATCTTTTATATTGGAAAATCATTATGAACAAGAGAGTAATGAAATTGGTAATGGTGTTGATGATATGCTTGGTGATGGAAATAATGAGAGTAGGAAGAACAAGTCTAGACTATTAATTGTGCTTGATGAGATTTGCAGGAGATACAGACAGTACTATCAGCAGATTCATGCAGTAATAACTTCGTTTGAATATGTGGCCGGCCTCGGAAATGCAGCACCGTACGCAAGTTTGGCTATAAATGCCATGTCCAAACAGTTTAGATGCGTGAAGAGTATGATTACTGACCAGCTTCAGTTTATCAGTAAGTCCAATTTTCAGATAAGCAATAGAAAGGATGAATCTCCAAGGTTTCGTAACGGTGATGGAGCCTCTTACAGCCAAAGGCTAGCGTTTCTAGAGCACGTCCAACAACCTGTTTGGCGACCTCAAAGAGGACTCCCTGAGCGCGCTGTTAGTGTTCTCAAGGCATGGCTGTTTGAACACTTTCTGCATCCTTATCCAACTGATACTGACAAGCTAATGTTGGCTAAACAAACCGGTCTATCTCGTAACCAGGTATCTAATTGGTTTATAAATGCAAGAGTTAGGCTTTGGAAACCAATGGTGGAGGAAATACACATGCTTGAATCACAACAATCTCAAAAGGAATCATCTCAAAGAGAAGAACATAGGAACAATTTCAGTGATAACAACATTGCTGATCAGAATCCATCTTCATCCACAGACAAGTTTCACGATGTCACATATAAACGAACTAGAAATGAACTTCACAATATGCCGGTGGTGAATCAACAAGTTGGTAATGTTGGAGTGAGCATGATGAATAGCGGCGCAACAAGCAATGGCGTATCTCTAACACTTGGCCTTCATCAAAATCATGCAATGGGATTATCTGATCAGCGATTTGACATGTGCGCTGCACAGCGTTTTGGTCTTGCACTTCAACCTGATAGCTACGTCATGAGTGGTTTTCAATTACAGAATCGACAATTCGGGAGAGATTTTATTGGAGGGCAACTTTTGCATGACTTTGTAGGATGA 1608 0.3856 MAEEGFEHYHIPQQSRREKLRFLSQNQPNFIESSTTLHPNYPPLPSPYDPSLISSLFLPSTNQNHSIMNPNPLLYQPQNHGYTDISASSSSNTNNNEVMLLKSEPLSLTLSSNQNNYQMNIHNPLEVNNLQKYGSVIDVSRNTVPLGPFTGYATVLKGSRFLKPAQQLLDEICYVGICADEKIVTAVDASFILENHYEQESNEIGNGVDDMLGDGNNESRKNKSRLLIVLDEICRRYRQYYQQIHAVITSFEYVAGLGNAAPYASLAINAMSKQFRCVKSMITDQLQFISKSNFQISNRKDESPRFRNGDGASYSQRLAFLEHVQQPVWRPQRGLPERAVSVLKAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQSQKESSQREEHRNNFSDNNIADQNPSSSTDKFHDVTYKRTRNELHNMPVVNQQVGNVGVSMMNSGATSNGVSLTLGLHQNHAMGLSDQRFDMCAAQRFGLALQPDSYVMSGFQLQNRQFGRDFIGGQLLHDFVG* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2395 535 Pfam Associated with HOX 155 283 IPR006563 -
Tpr6g2395 535 CDD homeodomain 329 390 IPR001356 GO:0003677
Tpr6g2395 535 SUPERFAMILY Homeodomain-like 331 396 IPR009057 -
Tpr6g2395 535 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 68 500 - -
Tpr6g2395 535 Pfam Homeobox KN domain 346 385 IPR008422 GO:0003677|GO:0006355
Tpr6g2395 535 ProSiteProfiles 'Homeobox' domain profile. 326 389 IPR001356 GO:0003677
Tpr6g2395 535 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 68 500 - -
Tpr6g2395 535 SMART HOX_1 329 393 IPR001356 GO:0003677
Tpr6g2395 535 MobiDBLite consensus disorder prediction 398 433 - -
Tpr6g2395 535 SMART prehox3 150 284 IPR006563 -
Tpr6g2395 535 MobiDBLite consensus disorder prediction 418 432 - -
Tpr6g2395 535 Gene3D - 332 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2395 Tpr-Chr6 26311201 26315286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2395 4 535 Homeobox Transcription Factor Family AT5G02030 42.596 1.53e-112 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tpr6g2395 POX 1.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2395 - - mtr:MTR_7g065050 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g2395 6 26311201 26315286 Tpr6g2395 6 26311201 26315286 ECH