Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2364 ATGACAACTTTGCAAATGACCCATGTTGATTTAGAACAAGGAAATCATCATCATCATCAACAACATCATCATCATCATCATCATAATCATAGTTCTGTGAGTGGTGAAGGTAGTTTATGTTTTTCTGATGCTGATGATGGTTCAAGCTATTCACGTTTCTATTCAACAAATGGTGGTTCATATGATGATTACTCTTTTGCTTGTGTTTCTGATCCTGAACTTGGAACTGGTGTTCATGATTCTGGTAGAGTTTCATCTGTATCTGATTGTTCTGTTGAGGTTGAAATTAGAATTGGGGTTCCTGAGATTAAGGTGCATTTGGCCAAAGTGGAGAAAGATTGTAGAATTTGTCACATGGGTTTGGAAAGTGAAAGTCATGAATCTGGTCCTCCAATTGAATTGGGTTGTTCTTGTAAAGAGGATTTAGCTGCTGCTCATAAAAACTGTGCTGAGGCTTGGTTCAAGATTAAGGGAAATAGGACCTGTGAAATTTGTCATTCAGTAGCGCGAAATGTTTACAGTGCAAATGAGGAATCAACAGAGAATGTGAGCGACAATAACAATGCTACCGCATCATCCACACTCTCAACAGCTGCTCCTACAGCAGAAACTCAAAGATTTTGGCACGGCCATCGTTTCTTAAATTTTCTGCTTGCTTGTATGGTTTTTGCATTTGTTATATCATGGCTTTTCCATTTCAACATGCCATCAACTTAG 717 0.3835 MTTLQMTHVDLEQGNHHHHQQHHHHHHHNHSSVSGEGSLCFSDADDGSSYSRFYSTNGGSYDDYSFACVSDPELGTGVHDSGRVSSVSDCSVEVEIRIGVPEIKVHLAKVEKDCRICHMGLESESHESGPPIELGCSCKEDLAAAHKNCAEAWFKIKGNRTCEICHSVARNVYSANEESTENVSDNNNATASSTLSTAAPTAETQRFWHGHRFLNFLLACMVFAFVISWLFHFNMPST* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2364 238 SUPERFAMILY RING/U-box 111 169 - -
Tpr6g2364 238 CDD RING_CH-C4HC3_MARCH 114 166 - -
Tpr6g2364 238 ProSiteProfiles Zinc finger RING-CH-type profile. 106 172 IPR011016 GO:0008270
Tpr6g2364 238 PANTHER ZINC FINGER, RING-CH-TYPE 5 237 - -
Tpr6g2364 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 177 IPR013083 -
Tpr6g2364 238 MobiDBLite consensus disorder prediction 176 196 - -
Tpr6g2364 238 MobiDBLite consensus disorder prediction 13 34 - -
Tpr6g2364 238 Pfam RING-variant domain 114 165 IPR011016 GO:0008270
Tpr6g2364 238 SMART ringv_2 113 166 IPR011016 GO:0008270
Tpr6g2364 238 PANTHER OS01G0850200 PROTEIN 5 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2364 Tpr-Chr6 25901507 25905795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2364 78 238 C3H Transcription Factor Family AT5G05830 60.494 1.20e-68 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2364 - - gmx:100808666 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g2364 6 25901507 25905795 Tpr4g2489 4 26653227 26656857 ECH
Tpr6g2364 6 25901507 25905795 Tpr6g2364 6 25901507 25905795 ECH