Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2334 ATGCTTCAGATTCGTCTTAGCAAGAATCCTTCATCTGATGGATCGGCAGGAGTGAAGCATTCACCTGTCGAAACTGTTACGGTTGCGTGCCCTGACCATTTAGTTCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGTACAGCTACTGGTTCATCTGTTGTTAGGAATGTAGGTCGGAGATCTCGACGTCAACTTGGTGAGCGAGTTCATTTTTGTGTTCGCTGTGATTTCCCGATTGCTATTTATGGACGGCTGAGCCCTTGTGAGCATGCTTTCTGTCTCGATTGTGCTAGAAGTGATTCATTATGCTACCTATGTGATGAACGAATCCAGAAGATTCAGACAGTCAAAGTGATGGAAGGAATCCTAGTATGTGCAGCTCCTCATTGTCTCAAGACATTCTTCAAGAGAGCTGAATTTGAATCTCATATCCATGAATACCACGCTGATCTTGTTCCCTCCAATCCAGATAAAGAAGACGGAAATGAGTCAGAGGCACAAAGTGTTAGACAACCTACAGCCTCAGACTCCACTGTTCGAGGCCCTCAAAGGCAAGTTTTTTCACCAGGTTCAAATTCTCAACCCCATGATCTGGAAGACAGAACCCGTCGGCAACCAGTAAGAGATCAAACTCCTTCAAGGCCAACAATGCAGCAAAAGCCGCCATTTTTCGGCCAGCAACATCACTCCTCAGATACCATGTCTGGTTCTGTTGGAGGTATGCAACATGGAATTCATCAACAAAGTTTTGACATGCAGCAGCATCCCCCACAAGAACCTTCCCAGTTTACCGACAGGCAGCAATCTGTTGGTCCAGATAACTCATTTCCTGAGTATCCAATACTGCACCCTGCACAACCCGCCAATGCCCCCCTGCACTCAAACCCAATGCTGAACCCACCCGCACCATTTGGTTATCCCCCTTACCCACAAGACCGATCCCAACCATTTTATGCTGCTGCACCCTATGATAATATGCCCAGGCAGGACTCAGCTTCTGATATAGGTGGGGACCCAAATTCATTAATGGGTTTCCCTCAAGGTGTCCCAAATGGCCCAAATTTTCAAGGAAATTATCCCCAACCCTGGAATGTGGCAGGTGTTCCTTTTGAACAAGCACAAAGTGGTGGCATGGTTGTGGATCCAAGGGATGCCAAAGGTATACTGGCACCACAACCCATGGCCCTCCCACCACCACCACCGCCACCAGCACACATGATGAAACAGAACTACTATTCTGGTGAGCATGGACATGATGGTCAAGGTTATGGCTGGCAGCATGATAACCGTGACAGCTTTAATGGTCAAGGCTAA 1314 0.4749 MLQIRLSKNPSSDGSAGVKHSPVETVTVACPDHLVLADLPVAKGIGTATGSSVVRNVGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSLCYLCDERIQKIQTVKVMEGILVCAAPHCLKTFFKRAEFESHIHEYHADLVPSNPDKEDGNESEAQSVRQPTASDSTVRGPQRQVFSPGSNSQPHDLEDRTRRQPVRDQTPSRPTMQQKPPFFGQQHHSSDTMSGSVGGMQHGIHQQSFDMQQHPPQEPSQFTDRQQSVGPDNSFPEYPILHPAQPANAPLHSNPMLNPPAPFGYPPYPQDRSQPFYAAAPYDNMPRQDSASDIGGDPNSLMGFPQGVPNGPNFQGNYPQPWNVAGVPFEQAQSGGMVVDPRDAKGILAPQPMALPPPPPPPAHMMKQNYYSGEHGHDGQGYGWQHDNRDSFNGQG* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2334 437 MobiDBLite consensus disorder prediction 209 235 - -
Tpr6g2334 437 MobiDBLite consensus disorder prediction 151 235 - -
Tpr6g2334 437 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 410 - -
Tpr6g2334 437 MobiDBLite consensus disorder prediction 394 437 - -
Tpr6g2334 437 MobiDBLite consensus disorder prediction 250 271 - -
Tpr6g2334 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 153 IPR013087 -
Tpr6g2334 437 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 410 IPR040383 GO:0016567|GO:0061630
Tpr6g2334 437 MobiDBLite consensus disorder prediction 151 165 - -
Tpr6g2334 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Tpr6g2334 437 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Tpr6g2334 437 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Tpr6g2334 437 MobiDBLite consensus disorder prediction 166 195 - -
Tpr6g2334 437 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2334 1 433 C2H2 Transcription Factor Family AT5G01160 43.274 6.28e-103 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2334 K15685 - gmx:100817582 680.248