Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2329 ATGATGTTTTCTATGGACTTGAATGCCTCTCCTGTGCCGGAGGAAGATGAAGATCCTTTTGAGGGCCAGGTAGAAGAGTATAATGCGCCGCCAAAAGAAGTGTATATTGCGCCAGAAGAACACATAGAAAGTGGAGCTGATATAGCGCGCCGGGAACGTGAAGAAAGAAAGAAACGGTTGAAAATAGAACGTTCAGATGACAGGCCCGTGCAAATATCACATGCACCTGGATATGATAATTTTTTCCATAATAAGATCCTTAAATCATATGATAGAAGTAAGCTTCCTCCGGGTTGGTTGAATTGCCCTTCATTTGGCCAGGAAATCGTTGGCATGATACCTTCTAAGGTTCCATTGGGTGAAGCTTTCAATGACTATATTGTTCCCGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAACTTGGTCTGGTCATTGATTTGACAAATACTTCTAGATACTATCCAGTATCAGATCTAAAGAAAGAGGGTATCAAGCATGTTAAGATCCAATGCGAGGGCCGCGGTTCAGTACCTGATAATTCATCTGTTAATCATTTTGTGTTTGAGGTTATACAATTTTTATCACATCAAAAACACTCAAAGAAGTATATACTTGTTCATTGTACACATGGTCATAATCGTACAGGATATATGATCATCCATTATCTAATGCGCACGATGTCAATGTCTGTTACTCAGGCAATAAAAATATTTTCTGATGCACGTCCTCCGGGAATCTATAAACCTGAGTATATTGATTCATTATATAAATTCTATCATGAAAAGAAGACTGAAATGATAGTTTGTCCTCCTACTCCTGAGTGGAAGAGAACTCCCCAACTCGTGGATCTCAATGGTGAAGCAGCTCCAGATGACGACGATAACGATGATGATGGAGTACCAGGTCCTCCGTTGCACGAGAACCACGAGATTGACGCAATAATGACAAATGATGATGTTTTGGGAGATGAGATACCTAATGATCAGCAATATGCATTTCGGCAGTTCTGCTTTCAGATACTCAAATTGGGGGTTGGGGCCAGAGGAAACATGCAATTTCCAGGGTCGCACCCAGTTTCTTTAAACAGGGATAATTTACAGCTGTTGCGACAGCGTTATTACTATGCAACATGGAAAGCTGATGGAACAAGATATATGATGCTAATAACTATGGATGGATGCTACTTGATTGATAGGAACTTCAATTTTAGAAGGGTTCAAATGAGGTTTCCATGCAGGGTTATAAATGATGGCTTGGCAGAGAAGACTCACCACTTCACATTGCTTGATGGGGAGATGATTATTGATACATTGCCAGATTCAAAAAAGCAGGAAAGGAGATACCTAATATATGATCTGATGGCAGTCAACCTTGTTTCAGTGATAGAGCGACCTTTCTGTGAACGGTGGAAGATGCTTGAGAAAGAAGTAATTGAACCCAGGAATCAGGAACGGTACCAAGGCAAAAATCCTTACTATAGATATGACATGGAGCCTTTCAGGGTGAGGAGGAAAGATTTCTGGTTGCTCTCTACTGTCACAAGACTTTTGAATGAATTCATTCCGAAACTCTCACATGATGCAGATGGTCTCATATTTCAGGGATGGGACGATCCTTATGTACCTCGCACTCATGAAGGTCTCTTAAAGTGGAAATATGCTGATCTGAATTCAGTTGATTTTCTCTTTGAGATTGATGATGATCGTCAGCTTCTTTTTCTCTATGAACGTGGAAAAAAGAAACTCATGGAAGGGTATATTGTTGCTTTCGAAGAAGGTTCAGACCCCTTGCTTTATTCTGGAAAGATTATTGAGTGTGCTTGGGATGGTGATAGAAACGAATGGATATTCAAGCGAGTCAGAACAGACAAGTCAACTCCCAATGACATCAATACTTACAAGAAGGTGATGCGAAGTATAAGAGATAATATCACGGAGGATGTCCTATTGACTGAAATAAACGAGATAATCCGCCTTCCCATGTATGCCGACAGGATAAGAAATGATAGCAAAGGACATCACCACAATAATATGGCTAGGCGAAGGTAG 2073 0.4028 MMFSMDLNASPVPEEDEDPFEGQVEEYNAPPKEVYIAPEEHIESGADIARREREERKKRLKIERSDDRPVQISHAPGYDNFFHNKILKSYDRSKLPPGWLNCPSFGQEIVGMIPSKVPLGEAFNDYIVPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVSDLKKEGIKHVKIQCEGRGSVPDNSSVNHFVFEVIQFLSHQKHSKKYILVHCTHGHNRTGYMIIHYLMRTMSMSVTQAIKIFSDARPPGIYKPEYIDSLYKFYHEKKTEMIVCPPTPEWKRTPQLVDLNGEAAPDDDDNDDDGVPGPPLHENHEIDAIMTNDDVLGDEIPNDQQYAFRQFCFQILKLGVGARGNMQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRNFNFRRVQMRFPCRVINDGLAEKTHHFTLLDGEMIIDTLPDSKKQERRYLIYDLMAVNLVSVIERPFCERWKMLEKEVIEPRNQERYQGKNPYYRYDMEPFRVRRKDFWLLSTVTRLLNEFIPKLSHDADGLIFQGWDDPYVPRTHEGLLKWKYADLNSVDFLFEIDDDRQLLFLYERGKKKLMEGYIVAFEEGSDPLLYSGKIIECAWDGDRNEWIFKRVRTDKSTPNDINTYKKVMRSIRDNITEDVLLTEINEIIRLPMYADRIRNDSKGHHHNNMARRR* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2329 690 Gene3D DNA ligase/mRNA capping enzyme 324 560 - -
Tpr6g2329 690 Pfam mRNA capping enzyme, C-terminal domain 565 658 IPR013846 -
Tpr6g2329 690 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 94 283 IPR029021 -
Tpr6g2329 690 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 326 561 - -
Tpr6g2329 690 Pfam mRNA capping enzyme, catalytic domain 365 560 IPR001339 GO:0004484|GO:0005524|GO:0006370
Tpr6g2329 690 SMART dsp_5 108 269 IPR020422 GO:0006470|GO:0008138
Tpr6g2329 690 Pfam Dual specificity phosphatase, catalytic domain 147 267 IPR000340 GO:0008138|GO:0016311
Tpr6g2329 690 MobiDBLite consensus disorder prediction 1 21 - -
Tpr6g2329 690 ProSiteProfiles Dual specificity protein phosphatase domain profile. 117 273 IPR020422 GO:0006470|GO:0008138
Tpr6g2329 690 PIRSF mRNA_capping_HCE 81 690 IPR017074 GO:0004484|GO:0006370|GO:0140818
Tpr6g2329 690 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 3 690 - -
Tpr6g2329 690 Gene3D - 599 667 IPR012340 -
Tpr6g2329 690 CDD RNA_5'-triphosphatase 98 265 - -
Tpr6g2329 690 ProSitePatterns Tyrosine specific protein phosphatases active site. 214 224 IPR016130 GO:0016311|GO:0016791
Tpr6g2329 690 CDD Adenylation_mRNA_capping 336 561 IPR001339 GO:0004484|GO:0005524|GO:0006370
Tpr6g2329 690 PANTHER MRNA-CAPPING ENZYME 3 690 - -
Tpr6g2329 690 ProSiteProfiles ATP-dependent DNA ligase family profile. 447 588 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tpr6g2329 690 Gene3D Protein tyrosine phosphatase superfamily 91 307 IPR029021 -
Tpr6g2329 690 SUPERFAMILY Nucleic acid-binding proteins 563 675 IPR012340 -
Tpr6g2329 690 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 192 261 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2329 Tpr-Chr6 25509311 25520111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2329 1 690 Protein tyrosine phosphatase (PTP) family AT3G09100 66.187 0.0 905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2329 K13917 - gmx:100803597 1214.91