Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2320 ATGATGTTATCTAGAACAATGAATAGAGGAATTGAAGTTCTATCACCAGCTTCATATATCCAAAATTCCAATTGGTTGTTTGAAGAAAACAAGGGTTCTAAGTGGACTCAAGAAGAGAATAAGCTGTTTGAGAATGCTTTAGCTTATTATGATAAGGATACTCCTGATAGATGGATAAGGGTAGCAGAGATGATTCCTGGAAAAACTGTAGGTGATGTGATTAAGCAGTATAGGGAGCTTGAAGAAGATGTTTGTGTTATTGAAGCCGGTTTGATACCGGTTCCTGGTTATACAACTAGTTCTTTCACATTGGATTGGGATAACAATCAAGGCTTTGATGATTTCAAGCAATTTTGTAGTGTTGGTGAGAAAAGGGGTGGTTCGACTCGGTCGTCTGAGCCGGAAAGGAAGAAAGGTGTGCCATGGACCGAAGAGGAGCATAGGCAATTTCTGTTGGGTCTGAAGAAGTATGGTAAGGGAGACTGGAGAAATATCTCTAGGAATTTTGTGACCACAAGGACACCAACTCAAGTCGCAAGTCATGCTCAAAAGTATTTCATAAGGCAAGTTTCAGGAGGGAAGGATAAGAGAAGATCCAGTATCCATGACATCACAGTGGTTAATCTACAAGAAACTAAATCTCCTTCATCAGACAGTAACAATCCTTCTTCTCCAGACCATTTGGTGAATACCGCGAACCAACCACGGAATCATAATTTGTCCGGCATGGTTAAGCAGGAATATGACTTGAAAATACCAGATGAGGAGGGTATGCCATTTGTTTTCAATTCAACTAAAGGAAACATGTATGTGGCACCATTGTGTGGGATTTCTTCACAAGAATCGAAATCACCGGGTCAAAATATACTCCGAGGCACTCACCATGGATTTCAGTTTTCACCTTTTGATACTATTTTCCAAATGCAATCTATGCAGCATCAATGA 945 0.4011 MMLSRTMNRGIEVLSPASYIQNSNWLFEENKGSKWTQEENKLFENALAYYDKDTPDRWIRVAEMIPGKTVGDVIKQYRELEEDVCVIEAGLIPVPGYTTSSFTLDWDNNQGFDDFKQFCSVGEKRGGSTRSSEPERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQVSGGKDKRRSSIHDITVVNLQETKSPSSDSNNPSSPDHLVNTANQPRNHNLSGMVKQEYDLKIPDEEGMPFVFNSTKGNMYVAPLCGISSQESKSPGQNILRGTHHGFQFSPFDTIFQMQSMQHQ* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2320 314 ProSiteProfiles SANT domain profile. 142 190 IPR017884 -
Tpr6g2320 314 ProSiteProfiles Myb-like domain profile. 27 81 IPR001005 -
Tpr6g2320 314 CDD SANT 141 186 IPR001005 -
Tpr6g2320 314 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 137 189 IPR006447 GO:0003677
Tpr6g2320 314 MobiDBLite consensus disorder prediction 128 142 - -
Tpr6g2320 314 ProSiteProfiles Myb-like domain profile. 134 186 IPR001005 -
Tpr6g2320 314 Gene3D - 140 190 - -
Tpr6g2320 314 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 7 241 IPR043363 -
Tpr6g2320 314 SUPERFAMILY Homeodomain-like 33 88 IPR009057 -
Tpr6g2320 314 SMART sant 31 83 IPR001005 -
Tpr6g2320 314 SMART sant 138 188 IPR001005 -
Tpr6g2320 314 MobiDBLite consensus disorder prediction 123 142 - -
Tpr6g2320 314 PANTHER TRANSCRIPTION FACTOR DIVARICATA 7 241 - -
Tpr6g2320 314 Pfam Myb-like DNA-binding domain 141 186 IPR001005 -
Tpr6g2320 314 Pfam Myb-like DNA-binding domain 33 79 IPR001005 -
Tpr6g2320 314 CDD SANT 34 80 IPR001005 -
Tpr6g2320 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 190 IPR017930 -
Tpr6g2320 314 Gene3D - 26 94 - -
Tpr6g2320 314 SUPERFAMILY Homeodomain-like 136 189 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2320 Tpr-Chr6 25378150 25381159 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g2320 Myb_DNA-binding 4.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2320 - - var:108329798 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g2320 6 25378150 25381159 Tpr4g2436 4 26095077 26097481 ECH
Tpr6g2320 6 25378150 25381159 Tpr6g2320 6 25378150 25381159 ECH
Tpr6g2320 6 25378150 25381159 Tpr4g2652 4 29433273 29436316 ECH
Tpr6g2320 6 25378150 25381159 Tpr3g3768 3 42058349 42061221 ECH