Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2306 ATGATTTGCAATTGTTTTGGTGTTTTGAATTGGTGTAAAGGGAAGGGTGAACCTATTGAGGGCACACATGAACAAGTGAAGGAAACTAAAAGCTTTAGCTATAGCTCATTGAGATCAGCTACAGGAGATTTTCATCCTTCATGCAAAATTGGTGGAGGAGGCTATGGAGTTGTCTACAAGGGTGTTTTAAGGGATGGTACTCAAGTTGCTATCAAGTCTCTTTCTGTTGAGTCTAAACAAGGAACTCATGAATTTATGACCGAAATTGATACGATAGCAAATATACAACATCCAAATCTTGTTAAACTGATTGGCTTCTGTGTTGAGGGTAATCATCGAATATTGGTGTACGAGTTTCTCGAGAACAATAGCCTCGCAAGTTCTTTGCTAGGTTCAAAGAGTAAATGTGTTCGTCTGGATTGGCCAAAGAGGGCTGCTATTTGCTGCGGTACAGCATCGGGTCTAAGCTTTCTTCACGAAGAGGCTCAGCCAAACATTGTTCATAGAGATATCAAAGCAAGCAATATATTGTTAGATGAGAATTTCAATCCAAAAATTGGTGATTTTGGTCTTGCAAAACTTTTTCCTGACAATGTCACACATGTTAGCACTCGAGTTGCAGGAACAATGGGATATCTTGCGCCAGAATATGCGCTTCTAAGACAGCTTACAAAGAAGGCAGATGTATACAGTTTTGGGATTCTGATGCTTGAAATAATCAGTGGTAAAAGTAGTAGCAAAGCTGCATTTGGGGACAATATTTTGGTACTGGTCGAATGGGCATGGAAGCTAAAAGAAGAAAACCGGCTTCTAGAACTCGTTGATTCAGAAATAACCGACTATGACGAGAACGAGGTGTATCGGTTCCTTGTAGTTGCTCTATTTTGCACCCAATCAACAGCTCAACATAGACCAACCATGAAACAAGTACTACAAATGCTTTCAAAACAAGTTCATCTTAATGAGAAGGCATTAACTGAGCCTGGAATATACAGATGGAATTCATCTGTAAAGTCGAGCGGTTCTTTTAACAAAACACCATTGCGGTCATCTCAAGTGATCAAGCACAAAAATTATGAAAATCAACATCAAACCTCTACGCAATTTAGCGGTACAGATATTGTGACAGAGGTTTTTCCTAGATGA 1146 0.3944 MICNCFGVLNWCKGKGEPIEGTHEQVKETKSFSYSSLRSATGDFHPSCKIGGGGYGVVYKGVLRDGTQVAIKSLSVESKQGTHEFMTEIDTIANIQHPNLVKLIGFCVEGNHRILVYEFLENNSLASSLLGSKSKCVRLDWPKRAAICCGTASGLSFLHEEAQPNIVHRDIKASNILLDENFNPKIGDFGLAKLFPDNVTHVSTRVAGTMGYLAPEYALLRQLTKKADVYSFGILMLEIISGKSSSKAAFGDNILVLVEWAWKLKEENRLLELVDSEITDYDENEVYRFLVVALFCTQSTAQHRPTMKQVLQMLSKQVHLNEKALTEPGIYRWNSSVKSSGSFNKTPLRSSQVIKHKNYENQHQTSTQFSGTDIVTEVFPR* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2306 381 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 355 - -
Tpr6g2306 381 Gene3D Transferase(Phosphotransferase) domain 1 120 329 - -
Tpr6g2306 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Tpr6g2306 381 Gene3D Phosphorylase Kinase; domain 1 13 119 - -
Tpr6g2306 381 Pfam Protein kinase domain 47 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2306 381 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 355 - -
Tpr6g2306 381 SUPERFAMILY Protein kinase-like (PK-like) 24 314 IPR011009 -
Tpr6g2306 381 CDD STKc_IRAK 63 316 - -
Tpr6g2306 381 ProSiteProfiles Protein kinase domain profile. 44 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2306 381 SMART serkin_6 44 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2306 381 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2306 Tpr-Chr6 25116334 25120027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2306 31 329 Receptor kinase-like Gene Family AT1G56120 52.843 3.08e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr6g2306 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2306 - - gmx:100785766 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g2306 6 25116334 25120027 Tpr6g2306 6 25116334 25120027 ECH