Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2303 ATGACAAAGGGCAAGGGAACAGGAAAGACTTCGAGGGAAGTATTGAAACCAGTTGATGACCGAAAGGTAGGAAAGCGAAAAGCAGCTTCTAAACCTGAGAAGAGCAGTGCACCAAAGACGACTAAAAAGGACAAGAAGGCCAAGAAAGATCCCAACAAACCAAAAAGACCTCCAAGCGCTTTCTTTGTCTTTCTTGAGGATTTCAGAAAGACTTTCAAGGCAGAAAATCCTAATGTGAAGGCTGTATCAGCTGTCGGAAAAGCTGGAGGAGAGAAATGGAAATCTTTGACTAAGCCGGAAAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGTTGAGTATGAAAAACTTATGAATGCTTATAATAACAAGGTAATCATATGTTGTGTTTCTAGTTTTGCTGTTTGTGTTTTGATTGTCTTGTTCATGTGTTTAACTTTCTTTAATGTTGATAGCCAAGTGCAGCAGACGATGAAGATGAGGAATCAGACAAGTCCAAATCTGAAGTTAATAATGAAGATGAAGCAAGTGGAGAGGACGACCACCAAGATGATGAGGACGAAGATGACGAGGAAGAGGATGATGACGATGAAGATGATGATTGAGATTTGTGTGCATAACTTGAAATATGATGTTTCATTGGTTGAGGGAAGCTTTTATGTATTTTGTAGTAGGGCTACTTTTGGATATCTTTGTTGGTTGAATATTTATCTGTTATTGCTGGTATGA 732 0.3907 MTKGKGTGKTSREVLKPVDDRKVGKRKAASKPEKSSAPKTTKKDKKAKKDPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKPEKAPYEAKAAKRKVEYEKLMNAYNNKVIICCVSSFAVCVLIVLFMCLTFFNVDSQVQQTMKMRNQTSPNLKLIMKMKQVERTTTKMMRTKMTRKRMMTMKMMIEICVHNLKYDVSLVEGSFYVFCSRATFGYLCWLNIYLLLLV* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2303 243 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 54 123 IPR009071 -
Tpr6g2303 243 Gene3D High mobility group box domain 37 127 IPR036910 -
Tpr6g2303 243 Pfam HMG (high mobility group) box 54 123 IPR009071 -
Tpr6g2303 243 SUPERFAMILY HMG-box 39 124 IPR036910 -
Tpr6g2303 243 MobiDBLite consensus disorder prediction 9 55 - -
Tpr6g2303 243 MobiDBLite consensus disorder prediction 1 58 - -
Tpr6g2303 243 CDD HMGB-UBF_HMG-box 56 119 - -
Tpr6g2303 243 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 125 IPR031061 -
Tpr6g2303 243 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 2 125 - -
Tpr6g2303 243 SMART hmgende2 53 124 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2303 Tpr-Chr6 25076131 25079059 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Tpr6g2303 HMG_box 2.8e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2303 K25507 - egr:104419103 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g2303 6 25076131 25079059 Tpr6g2303 6 25076131 25079059 ECH