Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2300 ATGGCAACTTCAAATGTTGCAAATGGAAATGGTTCAAGTGAGACCAAGGGAAAGACCATCACTTGCAAAGCCGCCGTGGCACATGGTCCGGGAGAACCTTTTGTCGTGGAGCAAATTCTTGTACATCCTCCTAAAAAAATGGAGGTTCGAATTAAGATCCTCTATACTTCTATTTGTCACACCGATCTCAGCGGTTGGAAAGGCGAGTGTGAACCTCAACGTGCTTATCCTCGGATTTTTGGCCATGAAGCTTCCGGGGTTGTGGAGAGTGTGGGAAAAGGAGTGAGTGACATAAAAGAAAAGGACATAGTTGTCCTAATATTTAATGGTGAGTGTGGTGAATGTGTCTATTGCAAGTGTGAGAAAACCAACATGTGTGAGAAGTTTGGGGTAGACCCAATGAAGAAGCTAATGTGTGATGGTACAAGTAGATTTTCAACAATTGATGGCAAACCCATTTTCCATTTCTTGAACACTTCAACTTTCACGGAGTATACAGTGGTGGATTCAGGTTGTGTTGTTAAGGTCAACCCTCAAGAAACTCTTTGCCTTAAAAACCTCACCATGCTTAGTTGTGGAGTTTCCACAGGAATTGGAGCTGCTTGGAATACTGCTAATGTACATGCTGGTTCATCTGTAGCAGTCTTTGGTTTAGGTGCAGTTGGCCTCGCAGTTGCAGAAGGGGCACGAGCCAGAGGTGCTTCCAAAATAATAGGTGTGGATATCAACCCAGACAAATTCATCACAGCCAAAACAATGGGAATCACAGACCTCATAAATCCAACTGATGAAGAGAAGCCGGTATATGAGAGAATCAGAGAAATGACTGGGGGAGGAGGTGTAGACTACAGTTTTGAATGTACAGGAAACTTGAATGTTCTAAGAGATGCCTTCTTGTCTGTTCATGAGGGTTGGGGATTGACTGTACTATTGGGAATTCAATCATCACCAAAGTTGCTACCCATACACCCGATGGAGCTCTTTGATGGGCGCAGAATCGAAGGATCAATTTTTGGAGGTTTCAAAGGCAAAAGTCAGTTGCCTAATCTCGCCACAGAATGCATGCAAGGGGCGATAAAGCTGGATAAGTTCATCACTCACGAACTTCCCTTTGAGGAGATAAACAAAGCCTTTGACCTTTTGATTGACGGGAAATCTCTGAGATGTCTTCTGCACCTCTAA 1182 0.4374 MATSNVANGNGSSETKGKTITCKAAVAHGPGEPFVVEQILVHPPKKMEVRIKILYTSICHTDLSGWKGECEPQRAYPRIFGHEASGVVESVGKGVSDIKEKDIVVLIFNGECGECVYCKCEKTNMCEKFGVDPMKKLMCDGTSRFSTIDGKPIFHFLNTSTFTEYTVVDSGCVVKVNPQETLCLKNLTMLSCGVSTGIGAAWNTANVHAGSSVAVFGLGAVGLAVAEGARARGASKIIGVDINPDKFITAKTMGITDLINPTDEEKPVYERIREMTGGGGVDYSFECTGNLNVLRDAFLSVHEGWGLTVLLGIQSSPKLLPIHPMELFDGRRIEGSIFGGFKGKSQLPNLATECMQGAIKLDKFITHELPFEEINKAFDLLIDGKSLRCLLHL* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2300 393 Gene3D - 26 389 - -
Tpr6g2300 393 SUPERFAMILY GroES-like 343 392 IPR011032 -
Tpr6g2300 393 Pfam Zinc-binding dehydrogenase 220 340 IPR013149 -
Tpr6g2300 393 Pfam Alcohol dehydrogenase GroES-like domain 48 174 IPR013154 -
Tpr6g2300 393 PANTHER ALCOHOL DEHYDROGENASE 15 392 - -
Tpr6g2300 393 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 187 357 IPR036291 -
Tpr6g2300 393 PANTHER ALCOHOL DEHYDROGENASE-LIKE 3 15 392 - -
Tpr6g2300 393 Gene3D - 197 336 - -
Tpr6g2300 393 SUPERFAMILY GroES-like 15 216 IPR011032 -
Tpr6g2300 393 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 81 95 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2300 Tpr-Chr6 25037233 25046494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2300 48 381 Monolignol Biosynthesis Gene Families AT2G21730 26.590 8.55e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2300 K00001 - gmx:100819896 596.66