Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2298 ATGGATTCTCGCCAAATAACACAAGAACAACAACCATGGCTTTTGGAGAATGGTGACCCAAAGCGCTTGACCAAGGAAGCAAGACATGGACATGGACGGAGCCGAAATGTGCATAACCTTTCTACGTCTTCGTTGCGCAAGAGATCTGGTTATACTCTCCTGTCGAAGGATCACCGTGCTTGCCTTCAGACTGTCTTGGTTAACATCCAAGAGGTTATTCTTGGTACCAAGCTGTCCATTCTCTTCCCTGCCATTCCTGCTGCTATCCTTGCTCATTACTTTGGCCTAGGAAGAGCATGGATTTTCATTCTGAGCTTACTTGGCCTCACTCCACTTGCAGAACGTGTGAGCTTCCTTACAGAACAAATTGCCTTCTTCACTGGTCCTACAGTTGGAGGACTTCTTAATGCAACATGTGGGAATATTACTGAGCTGATAATAGCAATATTTGCTCTTAGCAACAACCAAATTGCTGTGGTCAAGTATTCTCTTTTAGGCTCCATCCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCTCTTCTTTGTGGTGGCATTGCAAACCTTGGAGTCGAGCAAAAATATGACAGAAGACAAGCAGATGTGAATTCACTGATGCTTCTATTGGCATTATTATGCCATTCGCTTCCATTGCTATTCACATACAGTGCTGCATCACCTGAACTCACAGTAGAACCCACACTCTACTTGTCAAGAACTGCCAGCATCGTGATGTTGGGTGCATATGTTGTTTATTTGGTCTTTCAACTATGGACTCATAGGCAATTTTTTGAAGCTGAAGATGTATGGCAATTTTTGGAAGCTGAAGATGAAGGTTTAGGTGAGAACAATGAGGCAGAAGAAGAGGCTGTGATTGGATTTTGGAGTGCATTTGCTTGGTTGGCTGGAATGACTGTGTTCATTGCTTTGTTGTCTGAATATGTGGTGGATACAATTGAGGATGCATCAGATTCATGGGGTTTGTCTGTCAGTTTCCTAAGCATAATCTTGCTACCAATAGTTGGTAATGCAGCTGAACATGCTGGAGCAATCATTTTTGCTTTCAAGAACAAGCTGGACATTTCTTTAGGTGTTGCATTGGGCTCTGCTACTCAAATTGCAATGTTTGTGGTTCCACTCTGTGAAATTGTTGCTTGGATAATGGGTGTGAAAATGGACTTGAACTTCAACATCCTTGAGACAGGTTCTCTTGCTTTGGCAATTATTGTCACGGCCTTCACTTTACAGGATGGTACTTCCCACTACTTGAAAGGCCTTATTCTCCTACTTTGCTACTTTGTTATTGGTGCTTGTTTCTTTGTGCAAAGAACACCCATTAACCACAATGATGTTCCTAACTTTACTCTTAAATTAGTCACTGATTCAGTTTTAAGCACCTAA 1398 0.4213 MDSRQITQEQQPWLLENGDPKRLTKEARHGHGRSRNVHNLSTSSLRKRSGYTLLSKDHRACLQTVLVNIQEVILGTKLSILFPAIPAAILAHYFGLGRAWIFILSLLGLTPLAERVSFLTEQIAFFTGPTVGGLLNATCGNITELIIAIFALSNNQIAVVKYSLLGSILSNLLLVLGTSLLCGGIANLGVEQKYDRRQADVNSLMLLLALLCHSLPLLFTYSAASPELTVEPTLYLSRTASIVMLGAYVVYLVFQLWTHRQFFEAEDVWQFLEAEDEGLGENNEAEEEAVIGFWSAFAWLAGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAMFVVPLCEIVAWIMGVKMDLNFNILETGSLALAIIVTAFTLQDGTSHYLKGLILLLCYFVIGACFFVQRTPINHNDVPNFTLKLVTDSVLST* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2298 465 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 8 452 - -
Tpr6g2298 465 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 8 452 IPR004713 GO:0006812|GO:0008324|GO:0016021
Tpr6g2298 465 TIGRFAM caca2: calcium/proton exchanger 64 439 - -
Tpr6g2298 465 TIGRFAM cax: calcium/proton exchanger 84 439 IPR004798 GO:0006816|GO:0015369
Tpr6g2298 465 Gene3D - 284 440 IPR044880 -
Tpr6g2298 465 Gene3D - 129 275 IPR044880 -
Tpr6g2298 465 Pfam Sodium/calcium exchanger protein 99 257 IPR004837 GO:0016021|GO:0055085
Tpr6g2298 465 Pfam Sodium/calcium exchanger protein 296 434 IPR004837 GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2298 Tpr-Chr6 25022145 25026871 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2298 11 444 Antiporters AT2G38170 66.667 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2298 K07300 - gmx:100816231 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g2298 6 25022145 25026871 Tpr6g2298 6 25022145 25026871 ECH
Tpr6g2298 6 25022145 25026871 Tpr4g0751 4 7019046 7023803 PCT