Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2295 ATGGCTTCTCGCCAAATAACACAAGAACAACAACCATGGCTTTTGGAGAATGGTGATCCAAAGCGCTTGACCAAGGAAGCTAGACATGGACATGGGCGGAGCAGAACCGCCCATGGCATGTCTGCGACTTCCTTGCGCAAGAAATCCGATCATGCTCTTGTGTCGAGGGTTCGATGTGCTTCCCTTCGGAATGTCTTGGTTAACATCCAAGAAGTTATTCTTGGTACCAAGCTGTCCATTCTCTTTCCTGCCATTCCTGCTGCCATCATTGCTCATTACTTAGGCCTAGGAGAATCATGGGTTTTCATACTGAGCTTGCTTGGCCTCACACCACTTGCTGAACGTGTGAGCTTTCTCACAGAACAAATTGCTGTATACACTGGTCCTACAGTTGGAGGACTTCTTAATGCAACATGTGGGAATATTACTGAGGTGATTATAGCAATATTTGCTCTTCAAAGCAATCAAATTGCTGTTGTCAAGTATTCTCTTTTAGGTTCAATCCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCTCTTCTTTGTGGTGGAATTGCAAACATTGGAGACGAGCAAAAATATGACAGAAGACAAGCAGATATGAACTCACTCATGCTGCTATTGGCATTGTTATGTCATTTGCTTCCATTGCTATTCACATACACTGCTGCATCACCTGAACTCACAGCAGAACCTTCACTTTATTTGTCAAGAGCTGCTAGCATCGTGATGTTGGGCGCATATTTTGTTTACTTGATCTTTCAACTATGGACACATAGGCAATTATTCGAAGCCGAAGAAGTATGTGAAGGTGAAGGTGAAGGTGAGAACAATTCGGCAGAAGAAGAGGCTGTGATTGGATTTTGGAGTGCATTTGCTTGGTTGGCTGGAATGACTGTTTTCATTGCTTTGTTGTCTGAATATGTGGTGGATACAATTCAGGATGCATCAGACTCATGGGGTTTGTCTGTAAGCTTCCTCAGCATAATCTTGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATTTTTGCTTTCAAGAACAAGCTGGACATTACCTTAGGTGTTGCATTGGGTTCTGCCACTCAAATTGCAATGTTTGCGGTTCCTCTCTGTGTACTTGTTGCTTGGATAATGGGAGTGAAAATGGACTTGAACTTCAATCTCCTTGAGACAGGTTCTCTTGCTTTGGCAATTATCGTCACTGGCTTCACTTTACAGGATGGTACTTCTCACTACATGAAAGGTCTTGTTCTCCTACTTTGCTACCTTGTTATTGGTGCTTGTTTCTTTGTGCAAAGAACACCCCTTAACCCAAATGATGTTCCTAACAATATCACTCTCAAATCATTCACTGATTCAGTTTTAAGCGCCTAG 1386 0.4278 MASRQITQEQQPWLLENGDPKRLTKEARHGHGRSRTAHGMSATSLRKKSDHALVSRVRCASLRNVLVNIQEVILGTKLSILFPAIPAAIIAHYLGLGESWVFILSLLGLTPLAERVSFLTEQIAVYTGPTVGGLLNATCGNITEVIIAIFALQSNQIAVVKYSLLGSILSNLLLVLGTSLLCGGIANIGDEQKYDRRQADMNSLMLLLALLCHLLPLLFTYTAASPELTAEPSLYLSRAASIVMLGAYFVYLIFQLWTHRQLFEAEEVCEGEGEGENNSAEEEAVIGFWSAFAWLAGMTVFIALLSEYVVDTIQDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDITLGVALGSATQIAMFAVPLCVLVAWIMGVKMDLNFNLLETGSLALAIIVTGFTLQDGTSHYMKGLVLLLCYLVIGACFFVQRTPLNPNDVPNNITLKSFTDSVLSA* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2295 461 MobiDBLite consensus disorder prediction 17 42 - -
Tpr6g2295 461 Pfam Sodium/calcium exchanger protein 100 257 IPR004837 GO:0016021|GO:0055085
Tpr6g2295 461 Pfam Sodium/calcium exchanger protein 291 429 IPR004837 GO:0016021|GO:0055085
Tpr6g2295 461 TIGRFAM cax: calcium/proton exchanger 84 434 IPR004798 GO:0006816|GO:0015369
Tpr6g2295 461 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 8 445 - -
Tpr6g2295 461 TIGRFAM caca2: calcium/proton exchanger 64 434 - -
Tpr6g2295 461 Gene3D - 278 435 IPR044880 -
Tpr6g2295 461 Gene3D - 129 271 IPR044880 -
Tpr6g2295 461 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 8 445 IPR004713 GO:0006812|GO:0008324|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2295 Tpr-Chr6 24990262 24994590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2295 11 439 Antiporters AT2G38170 66.744 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2295 K07300 - gmx:100779440 646.351