Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2286 ATGAATCACCTTCTTCACCCACACACAGTTTCCTCTCTCTCTCTCTCTCTCACTTCTTCTCTTTCTCTCTCTACAATGCAACAACCACATTCCTCTACCGCCATTCCTTCTTCTTCTTCCACCTCCAACGCTGAAACTTCATTATCAATCCAAAATGCTCAAGTATCGGAGAACCGTCCACGCCAGTCTCGCCGCGTGCGCATCACTTACGGCGGGAGATTCAACCGGACTATTAGTATCACCGATGACTCCGCCATTGTTAGGGATGATAAATGGTCCTGTTTAGCCGTTATCTTCAGCCTTTGGTTTTTCGTTGCGGTGACAATGATAATGGGGGTTTATGGGTCGATGAGTGTGGCTCTAGGTCCATGTTCTTCAATTGTTTTTCATCCAAACCCTGTGTTTGTGCAATATGTGAAGGTAGAAAACTTACAGGCAAATCCAGGACTCATTCTATATGGTACATATCAATATCCGTCTCTTGATGTTGTTTCCACTTGGAGAGAAACTTTTAATATATCTATTCCTTATGGCTCAGAAAAGGAATGGAAATTATATCTGAATAGAGGATCTGAAGTGAATATTTCATATAGCTTGAGCTCTGAGAGCTCCTCTGTTTATCTTGTAATTGCAGAAGGAGCTGAAAGCCTCTCAGAGTGGATGGCTGACCCAACATATCCCAATACAACTCTGTCTTGGAACATGATCCATGGAACTGGTATGATTACGCAGGAAATATTCAGGTCATCCAGCTATTATGTGGCATTGGGTAATTTGGAAGGGGAGGAAGTGGAGAGTCAGGTGGAATTAAACCTCACTGTAAAGGCCATCTTGCATAATACAACAAATGCTTACTACAAATGTGCCCTGACTAGTAGTCCATGTGGTCTGAATATTTTCTTTCCTTATGGAAACACAGCTGTCTTAGTTTCTCCTGCTCCACAACAGAACACATCCAATGAAGAGTGGTATGTCAAACTGTCTTATGGACCAAGATGGCTTACATATATTTTTGGCATAGGTGGACTGACTATGATCATGTTTTGGGCCTTCAACGTCTTGACTAAGCTTCAGAGTGCCCACGATGATCGAGTAGAATCCAGATCTGAAGGACCGGGTCCTGATCAAGCCTCCTTGCTTTCTCGCAAATATGACGATCGTTCAAGTTGGGGTTCATCATATGATTCTTTACCAGAGGATGAGGAAGATCTTGATTTTCTCGCTGGAGGTTCTACTGATGGGAAATGTTTAGGTGATGGTGAAACCAGTAATAATACTCGTCGTCTTTGTGCAATTTGTTTTGATGCTCCACGGGACTGCTTTTTTCTTCCATGTGGGCACTGTGTGGCTTGTTATGAATGTGGAACTAGGATAGTTGAGGCAGCTGGTACATGTCCTGTTTGTCGTAGGAACATGAAGAAGGTGAGGAAAATTTTTACAGTATGA 1446 0.4281 MNHLLHPHTVSSLSLSLTSSLSLSTMQQPHSSTAIPSSSSTSNAETSLSIQNAQVSENRPRQSRRVRITYGGRFNRTISITDDSAIVRDDKWSCLAVIFSLWFFVAVTMIMGVYGSMSVALGPCSSIVFHPNPVFVQYVKVENLQANPGLILYGTYQYPSLDVVSTWRETFNISIPYGSEKEWKLYLNRGSEVNISYSLSSESSSVYLVIAEGAESLSEWMADPTYPNTTLSWNMIHGTGMITQEIFRSSSYYVALGNLEGEEVESQVELNLTVKAILHNTTNAYYKCALTSSPCGLNIFFPYGNTAVLVSPAPQQNTSNEEWYVKLSYGPRWLTYIFGIGGLTMIMFWAFNVLTKLQSAHDDRVESRSEGPGPDQASLLSRKYDDRSSWGSSYDSLPEDEEDLDFLAGGSTDGKCLGDGETSNNTRRLCAICFDAPRDCFFLPCGHCVACYECGTRIVEAAGTCPVCRRNMKKVRKIFTV* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2286 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 418 481 IPR013083 -
Tpr6g2286 481 SMART ring_2 430 468 IPR001841 -
Tpr6g2286 481 MobiDBLite consensus disorder prediction 365 384 - -
Tpr6g2286 481 SUPERFAMILY RING/U-box 429 475 - -
Tpr6g2286 481 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 29 481 - -
Tpr6g2286 481 ProSiteProfiles Zinc finger RING-type profile. 430 469 IPR001841 -
Tpr6g2286 481 Pfam Zinc finger, C3HC4 type (RING finger) 427 475 - -
Tpr6g2286 481 PANTHER OS05G0521000 PROTEIN 29 481 IPR044586 GO:0004842
Tpr6g2286 481 Pfam Domain of unknown function (DUF4793) 241 349 IPR032010 -
Tpr6g2286 481 Pfam Domain of unknown function (DUF4792) 149 217 IPR032008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2286 Tpr-Chr6 24820886 24827315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2286 403 478 C3H Transcription Factor Family AT3G06140 30.263 8.97e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2286 - - gmx:100791057 592.423