Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2276 ATGGAGGGTCATCATCTCCATCATCATCAACAACATCAACAACAACAACAACATCATCAACAACAACAAAGACAACAACAACAACAACAACAACATCAACAACATGCTCATAACATCATAGGTACTAGTAGTGTTAACGTTGATGTCACAGATAGATTTCCTCAATGGAGCATCCAAGAAACAAAAGAGTTTCTTATGATCCGTTCTGATCTTGATCAAACTTTCATGGAGACAAAGAGGAATAAGCAACTTTGGGAAGTTATCTCTAACAAAATGAAGGAAAAGGGTTATCATAGAAGTGCTGAACAGTGTAAGTGCAAATGGAAAAACCTTGTTACTCGCTATAAGGGATGTGAAACAATGGAGCTAGAAGCTATGAGACAACAATTTCCATATTACAATGAGCTTCAAGCTATATTTAGTGCAAGGATGCAAAGAATGCTTTGGGCTGAAGCAGAAGGAGGGTCAAAGAAGAAAGGGATGCATGTGTCTTCTGAGGATGAGGAAGAGTTGGGAAATGAAGAGAGTGAGGGAGACCACAAAGGAAACATTAAGAAAAAGAAGAAAAAGGGTAAAATGGTAATTGGTGGAGGAAATGATAGTGGTAGTACTAGCAATAATTTGAAGGAGATTCTTGAGGAGTTTATGAAGCAACAAATGCAAATGGAAGCTCAATGGATGGAAGCATTTGAGGCAAGAGAGAATGAGAGAAGGTTGAAGGAAATGGAATGGAGGCAAACAATGGAAGCATTGGAGAATGAGAGGATAATGATGGAACAAAGATGGAGAGAAAGGGAAGAACAAAGAAGGGTTAGAGAAGAAGCTAGGGCTGAAAAAAGAGATGCATTAATCACTATTCTTCTTGATAAGCTCACAAGAGAAGACATGTAG 891 0.3838 MEGHHLHHHQQHQQQQQHHQQQQRQQQQQQQHQQHAHNIIGTSSVNVDVTDRFPQWSIQETKEFLMIRSDLDQTFMETKRNKQLWEVISNKMKEKGYHRSAEQCKCKWKNLVTRYKGCETMELEAMRQQFPYYNELQAIFSARMQRMLWAEAEGGSKKKGMHVSSEDEEELGNEESEGDHKGNIKKKKKKGKMVIGGGNDSGSTSNNLKEILEEFMKQQMQMEAQWMEAFEARENERRLKEMEWRQTMEALENERIMMEQRWREREEQRRVREEARAEKRDALITILLDKLTREDM* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2276 296 Gene3D - 56 117 - -
Tpr6g2276 296 CDD GT1 54 119 - -
Tpr6g2276 296 MobiDBLite consensus disorder prediction 153 167 - -
Tpr6g2276 296 ProSiteProfiles Myb-like domain profile. 56 112 IPR001005 -
Tpr6g2276 296 PANTHER - 1 294 - -
Tpr6g2276 296 Coils Coil 241 268 - -
Tpr6g2276 296 MobiDBLite consensus disorder prediction 1 43 - -
Tpr6g2276 296 Coils Coil 205 225 - -
Tpr6g2276 296 Pfam Myb/SANT-like DNA-binding domain 55 139 IPR044822 -
Tpr6g2276 296 MobiDBLite consensus disorder prediction 153 206 - -
Tpr6g2276 296 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 1 294 - -
Tpr6g2276 296 MobiDBLite consensus disorder prediction 15 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2276 Tpr-Chr6 24703784 24705940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2276 31 294 Trihelix Transcription Factor Family AT2G38250 53.069 1.09e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tpr6g2276 Myb_DNA-bind_4 2.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2276 - - gmx:100794230 363.999